Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00526 ATGGCTCTCGAAGCTCTGCAATCACCCACCACTGCCACCCCATCGTTTAGTCCCTTTGAAGAAGCCAATCTCAGTTACTTGGACACACCTTGGGCCAAGCGAAAGCGTTCTAAGCGTGGCCGCATGGACCAACAACTACAACACCCTTCATGCACCGAGGAAGAGTACCTTGCTCTCTGTCTCATCATGCTCGCTCGCGGCGGCTCTGTCGACGCCACCGCCATCCCCACCACCGCCAAACCAGCTCTCTCCGACAACAACTCGGCGCCGCTCCCCGCCTCGAAACTCACCTACAAATGCTCCGTCTGCAACAAGGCCTTCTCCTCTTACCAAGCCCTCGGCGGACACAAGGCCAGTCACCGGAAACTCGCCGGCTCCGCCGAAGACCAGCCGACCTCCTCCGGCGTGACGACGACTTCGGCGTCGAACGGTGGAGGTAGGATCCACGAGTGCTCCATATGCCACAAAACGTTCCCGACAGGACAGGCCTTGGGAGGACACAAACGTTGTCACTACGAAGGCGGCGGCGGTGGTAACAGCGCCGTCACCGCCTCCGAAGGTGTGGGGTCCACTCACACAGGAAGCCACCGCGATTTCGATCTCAACCTCCCGGCTTTTCCGGATTTTCCAACGAGGTTCTTCGCGGATGACGAGGTTTCTAGCCCCCATCCATCCAAGAAGCCCCGTCTCAATTTGACCATACCCAAGATTGAAATCTCTCAATACTGA 729 0.5816 MALEALQSPTTATPSFSPFEEANLSYLDTPWAKRKRSKRGRMDQQLQHPSCTEEEYLALCLIMLARGGSVDATAIPTTAKPALSDNNSAPLPASKLTYKCSVCNKAFSSYQALGGHKASHRKLAGSAEDQPTSSGVTTTSASNGGGRIHECSICHKTFPTGQALGGHKRCHYEGGGGGNSAVTASEGVGSTHTGSHRDFDLNLPAFPDFPTRFFADDEVSSPHPSKKPRLNLTIPKIEISQY 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00526 242 ProSiteProfiles Zinc finger C2H2 type domain profile. 98 120 IPR013087 -
Spst9g00526 242 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 36 205 IPR044653 GO:0003700
Spst9g00526 242 MobiDBLite consensus disorder prediction 121 143 - -
Spst9g00526 242 Pfam C2H2-type zinc finger 98 122 - -
Spst9g00526 242 Pfam C2H2-type zinc finger 149 172 - -
Spst9g00526 242 Gene3D Classic Zinc Finger 96 171 - -
Spst9g00526 242 ProSiteProfiles Zinc finger C2H2 type domain profile. 149 171 IPR013087 -
Spst9g00526 242 ProSitePatterns Zinc finger C2H2 type domain signature. 100 120 IPR013087 -
Spst9g00526 242 MobiDBLite consensus disorder prediction 126 143 - -
Spst9g00526 242 ProSitePatterns Zinc finger C2H2 type domain signature. 151 171 IPR013087 -
Spst9g00526 242 SUPERFAMILY beta-beta-alpha zinc fingers 97 171 IPR036236 -
Spst9g00526 242 SMART c2h2final6 98 120 IPR013087 -
Spst9g00526 242 SMART c2h2final6 149 171 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g00526 Spst-Chr9 4631155 4631883 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g00526 1 234 C2H2 Transcription Factor Family AT1G27730 50.820 1.39e-66 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Spst9g00526 zf-C2H2_6 1.1e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g00526 - - gmx:100776038 407.527
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g00526 9 4631155 4631883 Spst9g00526 9 4631155 4631883 ECH