Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00509 ATGGGGAGAGTGAAGCTTCAGATCAAGAAGATTGAGAACACAACAAATAGGCAAGTTACTTTCTCGAAGAGGAGGAGTGGACTCATCAAGAAAGCTTACGAACTTTCTGTTCTTTGTGATGTTGATGTGGCTCTCATCATGTTTTCTCCATCTGGAAGAGCCAGTTTCTTCTCTGGCAACAAAAGATTTGAAGAAATTCTAGAACGATATGATAATCTTCAGGAGGGTGACACGGAAGAGGCAGCGGTGGCAGCTGCGGCAGAGACAATCACAAAAATGTGTGTCAGGATTCAACCATCTAACAGCAGTTTAGTTGTATGCCTACCTGTAGCACCAACCACGTTGTCATGCCCAGTGACACCATCAGTTTCCCAAATTGAGGAGATTCGAAGAGAACTTTTTACTTGCGAGTCTCAATTGAAAGAGATGGAAAAACGATTAAGGATATTTGAAGGTAATCCTTCGGAGATCACAACGCTGAGAGAGGCTGAATATCGTGAATATGTCCTTCGCGAAACTCTCAAACAAGTGCAATTGCGAAAGTGTGTTTTGGAGGAGAACAATTCTCAGGCCTCTCATTCACCACAGGTAAATGCTGCAAAAACTGTAAACGTAAATGGTTTTGTCACCAGCGCCTCAAAGAACCCAGTAGAATATTGGTTTCCACAGAAAAATCTAAATGCTCAGACTCTGAACTTTGCCAATGTTTATGAGGCTGCTCCTGTGAGGGATCAACAATCACATAGCATTGCTGATATGTTAACAGTGCATTCTGCAAACATGGATGAGGATGGTGAAATGAATCCTGGGAATAGTTTAGAGGTTGGTATTCATAATACAATACTACCTCCTCAGTTTGGACCAGATACTCACATCAATTCGTCCTCTTGGGAGCATCTTCATTCTTTAGGTTCTTACTGGTGTTAG 927 0.4207 MGRVKLQIKKIENTTNRQVTFSKRRSGLIKKAYELSVLCDVDVALIMFSPSGRASFFSGNKRFEEILERYDNLQEGDTEEAAVAAAAETITKMCVRIQPSNSSLVVCLPVAPTTLSCPVTPSVSQIEEIRRELFTCESQLKEMEKRLRIFEGNPSEITTLREAEYREYVLRETLKQVQLRKCVLEENNSQASHSPQVNAAKTVNVNGFVTSASKNPVEYWFPQKNLNAQTLNFANVYEAAPVRDQQSHSIADMLTVHSANMDEDGEMNPGNSLEVGIHNTILPPQFGPDTHINSSSWEHLHSLGSYWC 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00509 308 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Spst9g00509 308 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Spst9g00509 308 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Spst9g00509 308 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 198 - -
Spst9g00509 308 Coils Coil 126 146 - -
Spst9g00509 308 Gene3D - 13 93 IPR036879 GO:0003677|GO:0046983
Spst9g00509 308 FunFam Agamous-like MADS-box protein AGL66 isoform A 14 79 - -
Spst9g00509 308 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Spst9g00509 308 SUPERFAMILY SRF-like 2 78 IPR036879 GO:0003677|GO:0046983
Spst9g00509 308 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Spst9g00509 308 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Spst9g00509 308 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 54 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g00509 Spst-Chr9 4527791 4533815 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g00509 1 187 Type I MADS-box Gene Family AT1G77980 43.147 3.51e-43 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Spst9g00509 SRF-TF 6e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g00509 - - pvu:PHAVU_009G069300g 390.193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g00509 9 4527791 4533815 Spst9g00509 9 4527791 4533815 ECH