Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00496 ATGCAGTGTAGGGCAATGCATATCACAATCTTTCTCCTTCTTCTCTTCATCTCAACTTCATTTGCAGCGACAGATACACTTTCAGAAGGTTCGTCACTTTCAGTAGAGAAACAAAGTGACATCCTCGTTTCATCCAATGGCGATTTTTCAGCTAGCTTCTTCCAAGTTGGTGAGAACGCCTTCTGCTTCTCCGTTTGCTTCACGCGCTCCAAACGACCCACCGTTTTATGGATGGCCAACCGTGACGAACCCGTAAACGGCAAAGGCTCCTTCCTCTCACTCTGGAAAGACGGCAACCTCGTTTTGACGGATGCCGGAGGAACCGTTATGTGGTCAACCGCCACTTCCTTCCCCTCCGAACTTCATCTAAAGCTAAGAAACAACGGAAACCTCGTTCTCCTCACTTCCCAAGGCACCATCATTTGGCAAAGCTTCGAATCCCCAACGGACACACTTCTTCCAACGCAACCACTCACGGAGCAAGTGAGCCTCGTTTCTTCTAGAAGTGCAACGAACCATTCCTCCGGATTCTACAAACTTTACTTCGACAACGACAACGTTCTTCGCTTACTCTACAAAGGTACCACGTTTTCCAGCGTGTACTGGCCAGCCCCGTGGCAGCTTCCAATTGACATAGGCAGATCCACCTACAATGTAACCAAAACCGCTTTGTTGGATTCCTTCGGACTCTTCACTTCCTCTGATGGGTTTCAATTCCGCTCCACCGATTATCCCAAAAAAGTGTACAGAAGACTGAAGATGGATTCTGACGGTAACTTGCGTTTGTATAGCTTCATCGAGGAGAGTAAGACGTGGGAGGTGACGTGGCAACTCCTTTCCCAACCATGTACCGTTCATGGCATTTGTGGACCTAACAGCATGTGCAATCATGATCCTGTTATTGGCAGGAGTTGCTTTTGCTTGAAAGGGTTTAAGGTAAAGGATCCTAATGACTGGACTCTGGGGTGTGAGCCTGAGTTTCCTTCTTCTGATTTTTCTTGCAACAGTGCTGAGTCTTTGGGTTTTCTCCATCTTCGAACCTCGGAATGGTATGGCTATGACTGGAACGTGACACGCGTTTCGAGCTTAAAGGAATGCCAGAATCTATGTCTGGCGCTTTGTGATAAATGTGTAGGTGTCCAATTCAAGTTCAACGAGGTTTCTACCTATAATTGTTTCCTGAAAACGATGGCATTCAATGGACGGGATACTCCTAATTTCGATGGAGAGATTTATCTAAAGTTGCCGAATGCAATTTTGAGCTCATCCACGAAGACTCTTAAGCATTCCCTGATGAATTGCCCCGTTGGTTTGTCTCACCCGTTGAAGAGATTTTATCAAGCGCCAGGAAAAAACTCCACTCTGAGTTTCTTGGTTTGGTTCGCTTGCGGGTTCGGGCTGTTTGAGTTTTCCGCCATTTTCCTCGTGTGGTTCTTCTTGTTCAGAACTAGCAAGCACCCTGCTGACACGCTGGATCAACAACGACACCTTCTTTCCGCGACAGTGTTTCAAAGGTTCACCTACGCAGAGCTAAAAACCGCAACAAAAGGGTTCAAAGAAGAGGTTGGGCAAGGAGCAGGAGGGGTTGTTTACAAAGGGACATTACATGATAACCGTGTTGCGGCTATTAAACGCTTAAACGAAGCTACTCAAGTAGAAGCTGAATTTTTGGCTGAAATGAGCACAATTGGCATGCTGAACCACATGAATTTGATCGACATGTGGGGGTATTGCGTTGAAGGGAAGCACAGGCTTTTGGTTTATGAGTACATGGAACATGGATCTTTAGCGGACAATCTCTTTACTAATGCCCTTGATTGGAAGAAAAGGTTCAACGTTGCTGTGGGCACAGCGAAAGGTTTGGCTTACTTACACGAAGAGTGTTTGGAGTGGATTTTGCATTGCGATGTGAAGCCTCAAAACATTCTCCTTGACTCAGATTTCCATCCAAAGGTAGCAGATTTTGGGTTGTCAAAACTTTTAAACAGAGACGAGCGTGGAAATTCTAGTTTTTCACGAATAAGAGGGACTCGAGGGTACATGGCTCCAGAGTGGGTTTACAATCTTCGCATTACTGCTAAGGTGGATGTTTACAGCTACGGGATCGTGGTGTTGGAAATGGTGAGTGGAAGAAGCCCTATGGAAATCCAGAGTCTTGAGAACAGCAGGGGCATAGAGCAGCATCGGCTGGTGACGTGGATAAGGGACAAGATAAAGCATGCAACCACGCGTGAGTTTTGGATTGAGGAGATCATTGATCCCAGCTTGGAAGGAAACTACGACGTTTCACAGGTAGAGGCTTTGGTTAAGGTGGCTTTGCAGTGTGTGAAAGATGACATGAATGAAAGACCATCCATGAGCCAGGTTGCAGAGATGCTTCAGTCCCATCAACATAAACTCCTCCCTCTTTAG 2412 0.4635 MQCRAMHITIFLLLLFISTSFAATDTLSEGSSLSVEKQSDILVSSNGDFSASFFQVGENAFCFSVCFTRSKRPTVLWMANRDEPVNGKGSFLSLWKDGNLVLTDAGGTVMWSTATSFPSELHLKLRNNGNLVLLTSQGTIIWQSFESPTDTLLPTQPLTEQVSLVSSRSATNHSSGFYKLYFDNDNVLRLLYKGTTFSSVYWPAPWQLPIDIGRSTYNVTKTALLDSFGLFTSSDGFQFRSTDYPKKVYRRLKMDSDGNLRLYSFIEESKTWEVTWQLLSQPCTVHGICGPNSMCNHDPVIGRSCFCLKGFKVKDPNDWTLGCEPEFPSSDFSCNSAESLGFLHLRTSEWYGYDWNVTRVSSLKECQNLCLALCDKCVGVQFKFNEVSTYNCFLKTMAFNGRDTPNFDGEIYLKLPNAILSSSTKTLKHSLMNCPVGLSHPLKRFYQAPGKNSTLSFLVWFACGFGLFEFSAIFLVWFFLFRTSKHPADTLDQQRHLLSATVFQRFTYAELKTATKGFKEEVGQGAGGVVYKGTLHDNRVAAIKRLNEATQVEAEFLAEMSTIGMLNHMNLIDMWGYCVEGKHRLLVYEYMEHGSLADNLFTNALDWKKRFNVAVGTAKGLAYLHEECLEWILHCDVKPQNILLDSDFHPKVADFGLSKLLNRDERGNSSFSRIRGTRGYMAPEWVYNLRITAKVDVYSYGIVVLEMVSGRSPMEIQSLENSRGIEQHRLVTWIRDKIKHATTREFWIEEIIDPSLEGNYDVSQVEALVKVALQCVKDDMNERPSMSQVAEMLQSHQHKLLPL 803
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00496 803 CDD PAN_AP_plant 333 416 - -
Spst9g00496 803 Pfam Protein kinase domain 519 791 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst9g00496 803 PIRSF SRK 1 803 IPR024171 GO:0004674
Spst9g00496 803 ProSiteProfiles Bulb-type lectin domain profile. 18 146 IPR001480 -
Spst9g00496 803 CDD STKc_IRAK 522 794 - -
Spst9g00496 803 SMART serkin_6 516 801 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst9g00496 803 CDD B_lectin 42 148 IPR001480 -
Spst9g00496 803 ProSitePatterns Protein kinases ATP-binding region signature. 522 544 IPR017441 GO:0005524
Spst9g00496 803 PANTHER OS07G0415500 PROTEIN 8 795 - -
Spst9g00496 803 FunFam Serine/threonine-protein kinase 591 800 - -
Spst9g00496 803 FunFam S-receptor-like serine/threonine-protein kinase 485 590 - -
Spst9g00496 803 Gene3D Transferase(Phosphotransferase) domain 1 591 800 - -
Spst9g00496 803 SMART blect_4 33 148 IPR001480 -
Spst9g00496 803 Pfam S-locus glycoprotein domain 245 314 IPR000858 GO:0048544
Spst9g00496 803 Pfam D-mannose binding lectin 74 161 IPR001480 -
Spst9g00496 803 Gene3D - 149 292 - -
Spst9g00496 803 SUPERFAMILY Protein kinase-like (PK-like) 493 794 IPR011009 -
Spst9g00496 803 ProSiteProfiles PAN/Apple domain profile. 334 416 IPR003609 -
Spst9g00496 803 SUPERFAMILY alpha-D-mannose-specific plant lectins 62 204 IPR036426 -
Spst9g00496 803 ProSitePatterns Serine/Threonine protein kinases active-site signature. 632 644 IPR008271 GO:0004672|GO:0006468
Spst9g00496 803 ProSiteProfiles Protein kinase domain profile. 516 801 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst9g00496 803 Gene3D - 18 146 IPR036426 -
Spst9g00496 803 Gene3D Phosphorylase Kinase; domain 1 482 590 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g00496 Spst-Chr9 4462243 4464654 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g00496 471 794 Receptor kinase-like Gene Family AT1G60800 37.237 1.78e-63 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Spst9g00496 Pkinase 5.2e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g00496 - - gmx:100816469 1308.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g00496 9 4462243 4464654 Spst9g00496 9 4462243 4464654 ECH