Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00488 ATGCCGAACACAAACCACCTCTTTAACCCCCACTCATTCCCGTTTCTGTTCCTGCTTCTGCTCCTACACGCTTCTTCATGCGCACATTGCTACACGCTCCAACATCGTCATATTCCGCCGTTGGTTTTCACAGACGCCAACGCCCTTCTCGCCTTCAAACAAAAAGCCGACGTTAACAACCACCTTGACTTCTCCCCCCTCACGCGCGGCCTCCGCTTCTGCGCGTGGCAGGGCGTTCAATGCAACGGCCCCAAAGTAGAGCGTCTCATTATCGAGGGCTTAGATCTCGGTGGCGTTTGGGCTCCAAACACACTCACGCGTCTCGACCAGCTCCGAGTCCTCAGTTTACAGAACAACTCACTCACCGGAGCTGTACCGGACCTCACTGGTCTCTTCAATCTCAAAAGCATTTTCATCGATAACAACCACTTCACCGGTTCTCTCCCTCCCTCACTCTTCTCTCTTCACCGTCTCCGAAACTTGGATTTCTCTCACAACAATCTCTCCGGACTTATATCCGCTGCGTTCACTAGCCTAGATCGTCTTCACAGCCTCCGTCTTAGTTATAACGGTTTCATCGGTTCAATCCCTCCGTTTAACCAGTCGTCTCTCAGAATATTTGAAGTCTCCGGAAACAACCTCTCCGGCGCGATTCCAGTGACTCCGACGCTGTTTCGTTTTCCGCCGTCTTCCTTCGCGTTAAACCCTAACCTCTGCGGCGAAATCATCCGCGTGCAATGCCGTCCCGCGCAGCCTTTCTTCGGGCCCGCGGCGCCGCCTTCGGCGGGGCTTGGTCAGAGTGCGCAGGTGCACGGTGTCAGCGGCTTAATCCGCCAGCCGTGCGAGAAGAAGCGGCGCGATCGGCGGGCGGTGATAATCGGATTCTCCGCCGGACTGTTCGTTCTGGTTTGCTCGCTGGGGTGCTTCGCGGCGGCGGTGAGGAAGCAGAGGAGTCGGAGCAGTAAGGACGCGCGGTCTGGCATGATGGCTGCGGATGCAGCGGCGACGGCGGAAGCTGCGGCGGTGATGCGGATGGAGATGGAGAGGGAGTTGGAGGAGAAGGTGAAGAGAGCGGAGGTGGCGAAGAGTGGGAGTTTGGTATTCTGTGCGGGTGAGGCGCAGGTGTATACGCTGGACCAGTTGATGAAGGGTTCCGCGGAGCTTTTAGGGAGAGGGTGTTTGGGAACCACTTACAAGGCGGCTCTTGATAACCGTCTGATGGTGACGGTGAAGCGCCTTGATGCGGGGAAAATGGCTGCGCATGCAACGAAGGAAGTGTTCGAGCGACACATGGAATCCGTTGGTGGGCTTCGACACCCCAACCTGGTTCCTCTTAGGGCCTATTTCCAGGCCAAGCAAGAGAGGCTCATTATCTACGACTTCCAGCCCAATGGCAGTCTCTTCTCCCTCATACACGGGTCGAGATCAAGCAGGGCAAGGCCATTACACTGGACATCATGCTTAAAAATAGCAGAGGATGTAGCACAAGGTCTGGCCTTCATCCATCAAGCATGGAGACTGGTCCACGGCAATCTCAAGTCCTCCAATGTCCTTCTTGGACCTGATTTCGAGGCATGCATCACTGATTACTGCCTCTCCGTGTTGACACACCCGTCCACATTTGACGAAGATGGGGATTCAGCAGCATACAGAGCTCCGGAGACTCGCAACCCAAATCATCAGCCAACCCACAAATCCGATGTTTATGCCTATGGGATTTTGTTGCTTGAGCTTCTGACGGGGAAATTTCCCTCTGAGCTTCCATTCATGGTTCCTGGGGACATGTCAAGTTGGGTGAGGTCCATCAGGGATGATAATGGGGGCGAAGATAGCCGAATGGACATGCTTCTTCAGGTGGCTACAACTTGTAGCTTGACCTCACCAGAGCAGAGGCCAACTATGTGGCAGGTCTTGAAGATGTTGCAGGAAATCAAAGAGATTGTACTATTGGAGGATAGTAGTGAACTGGAACTGCGCAGTAGTAATGCTATGCCTTAG 1998 0.5435 MPNTNHLFNPHSFPFLFLLLLLHASSCAHCYTLQHRHIPPLVFTDANALLAFKQKADVNNHLDFSPLTRGLRFCAWQGVQCNGPKVERLIIEGLDLGGVWAPNTLTRLDQLRVLSLQNNSLTGAVPDLTGLFNLKSIFIDNNHFTGSLPPSLFSLHRLRNLDFSHNNLSGLISAAFTSLDRLHSLRLSYNGFIGSIPPFNQSSLRIFEVSGNNLSGAIPVTPTLFRFPPSSFALNPNLCGEIIRVQCRPAQPFFGPAAPPSAGLGQSAQVHGVSGLIRQPCEKKRRDRRAVIIGFSAGLFVLVCSLGCFAAAVRKQRSRSSKDARSGMMAADAAATAEAAAVMRMEMERELEEKVKRAEVAKSGSLVFCAGEAQVYTLDQLMKGSAELLGRGCLGTTYKAALDNRLMVTVKRLDAGKMAAHATKEVFERHMESVGGLRHPNLVPLRAYFQAKQERLIIYDFQPNGSLFSLIHGSRSSRARPLHWTSCLKIAEDVAQGLAFIHQAWRLVHGNLKSSNVLLGPDFEACITDYCLSVLTHPSTFDEDGDSAAYRAPETRNPNHQPTHKSDVYAYGILLLELLTGKFPSELPFMVPGDMSSWVRSIRDDNGGEDSRMDMLLQVATTCSLTSPEQRPTMWQVLKMLQEIKEIVLLEDSSELELRSSNAMP 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00488 665 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 18 645 IPR046959 -
Spst9g00488 665 FunFam Leucine-rich repeat receptor protein kinase EMS1 101 199 - -
Spst9g00488 665 SUPERFAMILY L domain-like 43 221 - -
Spst9g00488 665 ProSiteProfiles Protein kinase domain profile. 383 649 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst9g00488 665 Gene3D Ribonuclease Inhibitor 43 246 IPR032675 -
Spst9g00488 665 Pfam Leucine rich repeat 133 191 IPR001611 GO:0005515
Spst9g00488 665 SUPERFAMILY Protein kinase-like (PK-like) 387 642 IPR011009 -
Spst9g00488 665 Gene3D Transferase(Phosphotransferase) domain 1 463 657 - -
Spst9g00488 665 Gene3D Phosphorylase Kinase; domain 1 346 461 - -
Spst9g00488 665 Pfam Protein kinase domain 387 638 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g00488 Spst-Chr9 4369288 4372456 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g00488 13 663 Receptor kinase-like Gene Family AT5G43020 55.157 0.0 675
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Spst9g00488 Pkinase 6.5e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g00488 - - var:108341030 1135.17