Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00481 ATGAAAGAAGAAGGTTTGGGAGATTGTTGTTCCTCCAATTCCACGATTACCAGGAACACCCAGAAACGGAAGCAGCAACAGCACCAAGACAAGCCATACAGAGGAATAAGGATGAGGAAGTGGGGGAAGTGGGTGGCGGAGATTAGAGAACCCAACAAGCGGTCCAGGATCTGGTTGGGTTCTTACGCCACCCCCGTCGCCGCCGCACGCGCCTACGACACCGCCGTCTTCTACCTCAGAGGCCCTTCCGCTCGCCTCAACTTCCCCGAACTGCTTTCCCAAGACGACGACGTTTCGACCCAACAGGGCAACATGTCCGCCGATTCTATACGCAAGAAAGCGACCCAAGTCGGCGCGAGAGTCGACGCGCTCCAAACCGCGCTTCAATCCTCGTCGTCGCACTCCGCTAATTCCAGCCACGTCAGCTCTGACAAACCAGACTTGAACGAGTATCCAAAACCCGAAGATTAG 471 0.5563 MKEEGLGDCCSSNSTITRNTQKRKQQQHQDKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYATPVAAARAYDTAVFYLRGPSARLNFPELLSQDDDVSTQQGNMSADSIRKKATQVGARVDALQTALQSSSSHSANSSHVSSDKPDLNEYPKPED 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00481 156 MobiDBLite consensus disorder prediction 96 156 - -
Spst9g00481 156 SUPERFAMILY DNA-binding domain 32 90 IPR016177 GO:0003677
Spst9g00481 156 CDD AP2 33 91 IPR001471 GO:0003700|GO:0006355
Spst9g00481 156 MobiDBLite consensus disorder prediction 1 34 - -
Spst9g00481 156 MobiDBLite consensus disorder prediction 96 111 - -
Spst9g00481 156 Gene3D AP2/ERF domain 32 90 IPR036955 GO:0003700|GO:0006355
Spst9g00481 156 FunFam Ethylene-responsive transcription factor 2 31 90 - -
Spst9g00481 156 SMART rav1_2 32 95 IPR001471 GO:0003700|GO:0006355
Spst9g00481 156 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 11 156 - -
Spst9g00481 156 Pfam AP2 domain 33 81 IPR001471 GO:0003700|GO:0006355
Spst9g00481 156 ProSiteProfiles AP2/ERF domain profile. 32 89 IPR001471 GO:0003700|GO:0006355
Spst9g00481 156 MobiDBLite consensus disorder prediction 8 22 - -
Spst9g00481 156 MobiDBLite consensus disorder prediction 122 145 - -
Spst9g00481 156 PRINTS Ethylene responsive element binding protein signature 71 91 IPR001471 GO:0003700|GO:0006355
Spst9g00481 156 PRINTS Ethylene responsive element binding protein signature 33 44 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g00481 Spst-Chr9 4320944 4321414 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g00481 31 156 AP2-EREBP Transcription Factor Family AT2G23340 58.993 3.38e-51 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Spst9g00481 AP2 5e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g00481 K09286 - gmx:100801528 277.715