Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00480 ATGGGGAGTAAAGGGTTTGAAAATGACATCCAAAGGAGTGAAACAGGAGAAACTCACGCGCAGCTTGCAGCTGGGTTGCTTAAAGAAGAGTTGCCAGCTGCACTCAACACTCAATCATATGGTTGGCGGGAAATGAGAATTATTGCCAAACCCCACTTCTCTTTCACCTTTTCTTCGTTCTATTCAGACCATATATGCCATTCTGCCTACACTACACCTGAACTTTATAATATAGTGGGAAATGGGGGTGAGGGTGAGGGTGAGGGTGAGGGTGAGCGAGTGAGAGTGAACGTTGGACATTCTCTGGCACTTGAAAAGGACAAAGACGGCATTCATGATATTGAGGGCAACACCTCATTTCCCACTTGGTCCACTTTACTAAACCGTCCTCTAATCCTCCTCTATATCATCTCCCTGTCATCCTATCTTCTCTCCACCACCACCACCACCACCATGAAGGTGCATCACTTCACACGTGCATTCTGGGAGCACGAACCTTTCCTCACCCTTGGTTGCAAGCGATTACGCCCTCTTGCTCCCAAGCTTCCCAACAACACCGACACCACAACTACCACCACCACCGTCCCTTCTCTTCCTTTCGACCTCAAGAGCTTCATCAGACCAGAAAGTGGCCCCAGAAAACTTGTTTCCTCTCTCGACAATAAAAACGATCCACCTTCACCCCAAGGCCAGGTTGAAACGCATCCAGGAGGGACGCGGTGGAATCCGACGCAAGAACAGATAGGTATATTGGAGATGCTGTACAAAGGAGGGACGAGAACTCCAAATGCTCAACAGATAGAGCAGATCACGGTTCAGCTAGGAAAGTACGGAAAGATCGAAGGGAAGAATGTGTTCTATTGGTTTCAGAATCACAAAGCACGCGAGAGACAAAAGCAGAAGCGCAACAGCCTTGCCTTTTCTCATACTCCTCGAACTCCCACAATTCATACTGTTGTTACTTTAGAGACAACAATGGGGGAAGTAGTAGAGAGAGACGATGAGGAAGGTAGTCCCTACAAGAAGAAGTGCAGGAGATGGGTGCTTGATTGCTTAGAAGAGCAAAGTATGTCATCATCGTCCCTGTGTGAAGAGGATGAACATAGAACTCTCGAGCTTTTCCCATTGCACCCGGAAAGAAGATGA 1146 0.4773 MGSKGFENDIQRSETGETHAQLAAGLLKEELPAALNTQSYGWREMRIIAKPHFSFTFSSFYSDHICHSAYTTPELYNIVGNGGEGEGEGEGERVRVNVGHSLALEKDKDGIHDIEGNTSFPTWSTLLNRPLILLYIISLSSYLLSTTTTTTMKVHHFTRAFWEHEPFLTLGCKRLRPLAPKLPNNTDTTTTTTTVPSLPFDLKSFIRPESGPRKLVSSLDNKNDPPSPQGQVETHPGGTRWNPTQEQIGILEMLYKGGTRTPNAQQIEQITVQLGKYGKIEGKNVFYWFQNHKARERQKQKRNSLAFSHTPRTPTIHTVVTLETTMGEVVERDDEEGSPYKKKCRRWVLDCLEEQSMSSSSLCEEDEHRTLELFPLHPERR 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00480 381 Gene3D - 239 304 - -
Spst9g00480 381 PANTHER WUSCHEL-RELATED HOMEOBOX 4 152 381 IPR044186 GO:0003700|GO:0010067|GO:0010087|GO:0051301
Spst9g00480 381 FunFam WUSCHEL-related homeobox 4 238 305 - -
Spst9g00480 381 Pfam Homeodomain 239 298 IPR001356 GO:0003677
Spst9g00480 381 SUPERFAMILY Homeodomain-like 235 306 IPR009057 -
Spst9g00480 381 ProSiteProfiles 'Homeobox' domain profile. 234 299 IPR001356 GO:0003677
Spst9g00480 381 MobiDBLite consensus disorder prediction 216 243 - -
Spst9g00480 381 MobiDBLite consensus disorder prediction 213 243 - -
Spst9g00480 381 CDD homeodomain 239 300 IPR001356 GO:0003677
Spst9g00480 381 SMART HOX_1 236 303 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g00480 Spst-Chr9 4312816 4315634 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g00480 152 305 Wox Gene Family AT1G46480 66.049 6.64e-64 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Spst9g00480 Homeodomain 1.8e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g00480 - - gmx:100781015 401.364