Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Spst9g00479 | ATGGCACAAGCTCCTGCGGAAGACCATTTTTTCAACACGGCATTGTACGTTGGGGATCTTGACAGCAACGTCACCGAAGATCAGCTCTATGATCACTTCAACGTGGTTGCCCAAGTCGTTTCCATTAGAATTTGCAGGGACTCTTTAACTCAGAAATCCCTCGGTTACGGCTACGTCAATTTCAGTAACGTTCAGGATGGATTGATCTTCGCTTTTTTTGTTGCATTGCTCGCCGCAAAAGCATTGAATGAGCTAAATTTCAGTGTGTTGGAAGGCAAACCCATTAGGGTAATGTACTCTAATCGGGACCCTACTCTTCGTAGGACTGGTGCAGCTAACCTTTTTATAAAGGTGCCTTTTGCAGATTCTTCCCCCTTGATGAGTATTATTGAATCTTTTTCTGCTTGCTCATTGAATCTTAATTTGGATAAGTCAATCGATCACAAGGATCTATTCGATGTTTTTGCGACTTTTGGAAATATTCTATCTTGCAAGGTTGCGAGGGATGCCTCTGGCGTGTCTAAAGGTCATGCTTTTGTGCAGTTTGATAACGAAGCCTCTGCAAAAGAGGCTACTGACAGGTTAAATGGCATGCTGCTCAATGATAAGAAGGTCTATGTGGGTCCCTTCATGCGAAAGAAGGATAGAGAGGCTGTTCCTAGTGGTGACGCAAACTTTAGTAATGTTTATGTAAAAAACCTGTCGCATAAAATAACGGATGCTGAGTTGGGGACAATTTTTGGAGAATATGGACCCATTACTAGTGCTGCAGTGATGAAAGATGCAGAAGGTAGATCAAAAGGTTTTGGTTTTGTCAATTTCACAAATGCTGCTGATGCTGCTAGAGCTCGGGACGCTCTTGATGGAAAGACTTTTGATGGTAGGCAGTGGTATGTTGGAAAAGCGCAGAGAAAAACTGAAAGGGAGCTTGAGCTGAAAGAGCGTCATGAGCAGAATTGGAAGCCTCAACCTTATAAGCAAGGTACAAACTTGTATATCAAGAACTTGGACAGTAGTATTGGGGATGAAGAACTCAAGGAAATTTTTTCTGGGTTTGGTACAATAACCTCATCCAAGATTATGCGAGATCCAAATGGAGTGAATAAAGGATATGGATTTGTTGCATATACAAATCCGGAGGACGCAAATCGGGCTCTTGCATCGATGAATGGTCAAATGATTGCTGGCAAACCTCTCTATGTTTCCCTTGCAGAGAAAAAGGAAGATAGAAGAGCAAGGTTAGAGGTACAATTTTCACAAATGAGGATTGCTGAGATGAGACCACAATTTTCACTAGGTGCACCACCTCGAATTCTAACTTACCCTATGAGGCCTCCTGAGATGACACCACAATTATTGTATGGGCAACCACATCGAGCAATCATAACTCAAACTGCATTTGGTTTCCAGCAACAGTTTTTCGGTGGAGGGACGGGTCCAGCGCCAGTCTTCTATCCAGTTCTTCTGCCGCCGCCCAGAGGACCCCAAGAAGCAGGTCCTATGCGATTGCCAATTTTACCCCAACAGGTCTTATTCTGCATTCCTTTGGTGATTCCCTTGTATTTTCCGTTCTCTATTGCTGATGTGGATACTTGTTGCTGTGGTTTTCAGATGGGTCCAAGGGGACCTATTTATCATAATCCTCCTCCTGCCCCCAATGCTCAAAATATTCCTCCGGAACCGAAAGGAACAGCTGAAGAAATGCCCCCTTTTATTGGCACTGGTCAGCCAATGCCAATTCAGGCCCTGGCAGCAGCCGTTGCCAATGCTACTACTCCTGATCAGAAGAGGATTCTGCTTGGGGAAACTTTATTCCCGTTAGTAGAAAAGCTGGTGCGTGATGCAGCACCAAAGGTTACTGGTATGCTTTTGGAGATGGACCATGCTGAGGTATTACATCTGATTGAGTCACCAGATGCTCTCGACACAAAAGTTACTGACGCCATGTATTTGTTGAGAAAATTTGAAGAGATCAAACAATCGATCGACCAATTGACTGTCTCTGAATGA | 2010 | 0.4388 | MAQAPAEDHFFNTALYVGDLDSNVTEDQLYDHFNVVAQVVSIRICRDSLTQKSLGYGYVNFSNVQDGLIFAFFVALLAAKALNELNFSVLEGKPIRVMYSNRDPTLRRTGAANLFIKVPFADSSPLMSIIESFSACSLNLNLDKSIDHKDLFDVFATFGNILSCKVARDASGVSKGHAFVQFDNEASAKEATDRLNGMLLNDKKVYVGPFMRKKDREAVPSGDANFSNVYVKNLSHKITDAELGTIFGEYGPITSAAVMKDAEGRSKGFGFVNFTNAADAARARDALDGKTFDGRQWYVGKAQRKTERELELKERHEQNWKPQPYKQGTNLYIKNLDSSIGDEELKEIFSGFGTITSSKIMRDPNGVNKGYGFVAYTNPEDANRALASMNGQMIAGKPLYVSLAEKKEDRRARLEVQFSQMRIAEMRPQFSLGAPPRILTYPMRPPEMTPQLLYGQPHRAIITQTAFGFQQQFFGGGTGPAPVFYPVLLPPPRGPQEAGPMRLPILPQQVLFCIPLVIPLYFPFSIADVDTCCCGFQMGPRGPIYHNPPPAPNAQNIPPEPKGTAEEMPPFIGTGQPMPIQALAAAVANATTPDQKRILLGETLFPLVEKLVRDAAPKVTGMLLEMDHAEVLHLIESPDALDTKVTDAMYLLRKFEEIKQSIDQLTVSE | 669 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Spst9g00479 | 669 | CDD | RRM4_I_PABPs | 328 | 406 | - | - | |
Spst9g00479 | 669 | CDD | RRM2_I_PABPs | 110 | 209 | IPR045305 | - | |
Spst9g00479 | 669 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 329 | 406 | IPR000504 | GO:0003723 | |
Spst9g00479 | 669 | SUPERFAMILY | PABC (PABP) domain | 538 | 661 | IPR036053 | GO:0003723 | |
Spst9g00479 | 669 | MobiDBLite | consensus disorder prediction | 548 | 567 | - | - | |
Spst9g00479 | 669 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 141 | 212 | IPR000504 | GO:0003723 | |
Spst9g00479 | 669 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 227 | 304 | IPR000504 | GO:0003723 | |
Spst9g00479 | 669 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 13 | 102 | IPR000504 | GO:0003723 | |
Spst9g00479 | 669 | Gene3D | - | 140 | 214 | IPR012677 | - | |
Spst9g00479 | 669 | Gene3D | - | 3 | 105 | IPR012677 | - | |
Spst9g00479 | 669 | SMART | poly_2 | 592 | 655 | IPR002004 | GO:0003723 | |
Spst9g00479 | 669 | ProSiteProfiles | Forkhead-associated (FHA) domain profile. | 156 | 205 | IPR000253 | GO:0005515 | |
Spst9g00479 | 669 | PANTHER | RNA BINDING PROTEIN | 326 | 424 | - | - | |
Spst9g00479 | 669 | SUPERFAMILY | RNA-binding domain, RBD | 8 | 109 | IPR035979 | GO:0003676 | |
Spst9g00479 | 669 | Gene3D | - | 575 | 657 | - | - | |
Spst9g00479 | 669 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 15 | 66 | IPR000504 | GO:0003723 | |
Spst9g00479 | 669 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 229 | 297 | IPR000504 | GO:0003723 | |
Spst9g00479 | 669 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 141 | 205 | IPR000504 | GO:0003723 | |
Spst9g00479 | 669 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 331 | 399 | IPR000504 | GO:0003723 | |
Spst9g00479 | 669 | SMART | rrm2_1 | 228 | 300 | IPR003954 | GO:0003676 | |
Spst9g00479 | 669 | SMART | rrm2_1 | 330 | 402 | IPR003954 | GO:0003676 | |
Spst9g00479 | 669 | FunFam | Poly(A) binding protein cytoplasmic 1 like | 323 | 410 | - | - | |
Spst9g00479 | 669 | SUPERFAMILY | RNA-binding domain, RBD | 227 | 409 | IPR035979 | GO:0003676 | |
Spst9g00479 | 669 | Pfam | Poly-adenylate binding protein, unique domain | 590 | 652 | IPR002004 | GO:0003723 | |
Spst9g00479 | 669 | Gene3D | - | 307 | 415 | IPR012677 | - | |
Spst9g00479 | 669 | Gene3D | - | 215 | 306 | IPR012677 | - | |
Spst9g00479 | 669 | ProSiteProfiles | Poly(A)-binding protein C-terminal (PABC) domain profile. | 580 | 657 | IPR002004 | GO:0003723 | |
Spst9g00479 | 669 | SUPERFAMILY | RNA-binding domain, RBD | 141 | 219 | IPR035979 | GO:0003676 | |
Spst9g00479 | 669 | SMART | rrm1_1 | 228 | 300 | IPR000504 | GO:0003723 | |
Spst9g00479 | 669 | SMART | rrm1_1 | 141 | 208 | IPR000504 | GO:0003723 | |
Spst9g00479 | 669 | SMART | rrm1_1 | 14 | 98 | IPR000504 | GO:0003723 | |
Spst9g00479 | 669 | SMART | rrm1_1 | 330 | 402 | IPR000504 | GO:0003723 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Spst9g00479 | Spst-Chr9 | 4306227 | 4309105 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Spst9g00479 | 9 | 653 | Eukaryotic Initiation Factors Gene Family | AT4G34110 | 49.770 | 0.0 | 601 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Spst9g00479 | K13126 | - | gmx:100778879 | 609.372 |