Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00479 ATGGCACAAGCTCCTGCGGAAGACCATTTTTTCAACACGGCATTGTACGTTGGGGATCTTGACAGCAACGTCACCGAAGATCAGCTCTATGATCACTTCAACGTGGTTGCCCAAGTCGTTTCCATTAGAATTTGCAGGGACTCTTTAACTCAGAAATCCCTCGGTTACGGCTACGTCAATTTCAGTAACGTTCAGGATGGATTGATCTTCGCTTTTTTTGTTGCATTGCTCGCCGCAAAAGCATTGAATGAGCTAAATTTCAGTGTGTTGGAAGGCAAACCCATTAGGGTAATGTACTCTAATCGGGACCCTACTCTTCGTAGGACTGGTGCAGCTAACCTTTTTATAAAGGTGCCTTTTGCAGATTCTTCCCCCTTGATGAGTATTATTGAATCTTTTTCTGCTTGCTCATTGAATCTTAATTTGGATAAGTCAATCGATCACAAGGATCTATTCGATGTTTTTGCGACTTTTGGAAATATTCTATCTTGCAAGGTTGCGAGGGATGCCTCTGGCGTGTCTAAAGGTCATGCTTTTGTGCAGTTTGATAACGAAGCCTCTGCAAAAGAGGCTACTGACAGGTTAAATGGCATGCTGCTCAATGATAAGAAGGTCTATGTGGGTCCCTTCATGCGAAAGAAGGATAGAGAGGCTGTTCCTAGTGGTGACGCAAACTTTAGTAATGTTTATGTAAAAAACCTGTCGCATAAAATAACGGATGCTGAGTTGGGGACAATTTTTGGAGAATATGGACCCATTACTAGTGCTGCAGTGATGAAAGATGCAGAAGGTAGATCAAAAGGTTTTGGTTTTGTCAATTTCACAAATGCTGCTGATGCTGCTAGAGCTCGGGACGCTCTTGATGGAAAGACTTTTGATGGTAGGCAGTGGTATGTTGGAAAAGCGCAGAGAAAAACTGAAAGGGAGCTTGAGCTGAAAGAGCGTCATGAGCAGAATTGGAAGCCTCAACCTTATAAGCAAGGTACAAACTTGTATATCAAGAACTTGGACAGTAGTATTGGGGATGAAGAACTCAAGGAAATTTTTTCTGGGTTTGGTACAATAACCTCATCCAAGATTATGCGAGATCCAAATGGAGTGAATAAAGGATATGGATTTGTTGCATATACAAATCCGGAGGACGCAAATCGGGCTCTTGCATCGATGAATGGTCAAATGATTGCTGGCAAACCTCTCTATGTTTCCCTTGCAGAGAAAAAGGAAGATAGAAGAGCAAGGTTAGAGGTACAATTTTCACAAATGAGGATTGCTGAGATGAGACCACAATTTTCACTAGGTGCACCACCTCGAATTCTAACTTACCCTATGAGGCCTCCTGAGATGACACCACAATTATTGTATGGGCAACCACATCGAGCAATCATAACTCAAACTGCATTTGGTTTCCAGCAACAGTTTTTCGGTGGAGGGACGGGTCCAGCGCCAGTCTTCTATCCAGTTCTTCTGCCGCCGCCCAGAGGACCCCAAGAAGCAGGTCCTATGCGATTGCCAATTTTACCCCAACAGGTCTTATTCTGCATTCCTTTGGTGATTCCCTTGTATTTTCCGTTCTCTATTGCTGATGTGGATACTTGTTGCTGTGGTTTTCAGATGGGTCCAAGGGGACCTATTTATCATAATCCTCCTCCTGCCCCCAATGCTCAAAATATTCCTCCGGAACCGAAAGGAACAGCTGAAGAAATGCCCCCTTTTATTGGCACTGGTCAGCCAATGCCAATTCAGGCCCTGGCAGCAGCCGTTGCCAATGCTACTACTCCTGATCAGAAGAGGATTCTGCTTGGGGAAACTTTATTCCCGTTAGTAGAAAAGCTGGTGCGTGATGCAGCACCAAAGGTTACTGGTATGCTTTTGGAGATGGACCATGCTGAGGTATTACATCTGATTGAGTCACCAGATGCTCTCGACACAAAAGTTACTGACGCCATGTATTTGTTGAGAAAATTTGAAGAGATCAAACAATCGATCGACCAATTGACTGTCTCTGAATGA 2010 0.4388 MAQAPAEDHFFNTALYVGDLDSNVTEDQLYDHFNVVAQVVSIRICRDSLTQKSLGYGYVNFSNVQDGLIFAFFVALLAAKALNELNFSVLEGKPIRVMYSNRDPTLRRTGAANLFIKVPFADSSPLMSIIESFSACSLNLNLDKSIDHKDLFDVFATFGNILSCKVARDASGVSKGHAFVQFDNEASAKEATDRLNGMLLNDKKVYVGPFMRKKDREAVPSGDANFSNVYVKNLSHKITDAELGTIFGEYGPITSAAVMKDAEGRSKGFGFVNFTNAADAARARDALDGKTFDGRQWYVGKAQRKTERELELKERHEQNWKPQPYKQGTNLYIKNLDSSIGDEELKEIFSGFGTITSSKIMRDPNGVNKGYGFVAYTNPEDANRALASMNGQMIAGKPLYVSLAEKKEDRRARLEVQFSQMRIAEMRPQFSLGAPPRILTYPMRPPEMTPQLLYGQPHRAIITQTAFGFQQQFFGGGTGPAPVFYPVLLPPPRGPQEAGPMRLPILPQQVLFCIPLVIPLYFPFSIADVDTCCCGFQMGPRGPIYHNPPPAPNAQNIPPEPKGTAEEMPPFIGTGQPMPIQALAAAVANATTPDQKRILLGETLFPLVEKLVRDAAPKVTGMLLEMDHAEVLHLIESPDALDTKVTDAMYLLRKFEEIKQSIDQLTVSE 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00479 669 CDD RRM4_I_PABPs 328 406 - -
Spst9g00479 669 CDD RRM2_I_PABPs 110 209 IPR045305 -
Spst9g00479 669 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 329 406 IPR000504 GO:0003723
Spst9g00479 669 SUPERFAMILY PABC (PABP) domain 538 661 IPR036053 GO:0003723
Spst9g00479 669 MobiDBLite consensus disorder prediction 548 567 - -
Spst9g00479 669 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 141 212 IPR000504 GO:0003723
Spst9g00479 669 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 227 304 IPR000504 GO:0003723
Spst9g00479 669 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 13 102 IPR000504 GO:0003723
Spst9g00479 669 Gene3D - 140 214 IPR012677 -
Spst9g00479 669 Gene3D - 3 105 IPR012677 -
Spst9g00479 669 SMART poly_2 592 655 IPR002004 GO:0003723
Spst9g00479 669 ProSiteProfiles Forkhead-associated (FHA) domain profile. 156 205 IPR000253 GO:0005515
Spst9g00479 669 PANTHER RNA BINDING PROTEIN 326 424 - -
Spst9g00479 669 SUPERFAMILY RNA-binding domain, RBD 8 109 IPR035979 GO:0003676
Spst9g00479 669 Gene3D - 575 657 - -
Spst9g00479 669 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 15 66 IPR000504 GO:0003723
Spst9g00479 669 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 229 297 IPR000504 GO:0003723
Spst9g00479 669 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 141 205 IPR000504 GO:0003723
Spst9g00479 669 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 331 399 IPR000504 GO:0003723
Spst9g00479 669 SMART rrm2_1 228 300 IPR003954 GO:0003676
Spst9g00479 669 SMART rrm2_1 330 402 IPR003954 GO:0003676
Spst9g00479 669 FunFam Poly(A) binding protein cytoplasmic 1 like 323 410 - -
Spst9g00479 669 SUPERFAMILY RNA-binding domain, RBD 227 409 IPR035979 GO:0003676
Spst9g00479 669 Pfam Poly-adenylate binding protein, unique domain 590 652 IPR002004 GO:0003723
Spst9g00479 669 Gene3D - 307 415 IPR012677 -
Spst9g00479 669 Gene3D - 215 306 IPR012677 -
Spst9g00479 669 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 580 657 IPR002004 GO:0003723
Spst9g00479 669 SUPERFAMILY RNA-binding domain, RBD 141 219 IPR035979 GO:0003676
Spst9g00479 669 SMART rrm1_1 228 300 IPR000504 GO:0003723
Spst9g00479 669 SMART rrm1_1 141 208 IPR000504 GO:0003723
Spst9g00479 669 SMART rrm1_1 14 98 IPR000504 GO:0003723
Spst9g00479 669 SMART rrm1_1 330 402 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g00479 Spst-Chr9 4306227 4309105 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g00479 9 653 Eukaryotic Initiation Factors Gene Family AT4G34110 49.770 0.0 601
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g00479 K13126 - gmx:100778879 609.372