Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Spst9g00464 | ATGGACACTACGGAACAGTTAAAGCCGGAGGAGGAGGAGCAGCAGCAGATGGATATCATGACCGTCATGATGCAGCACCTCCCTCAATTCTCTGAACCCTACAGTGAAACTAACACCATGGAAGGATTTCACCCCCCAGAGGAGTTCTACGGTAACGACAACAATATACGCAGTGGTAGCACTATGCCATTAGCAGATTTACTTGATAATAGCCCTCCTAGCCCCATACCTTGGTCCTCTTACTCATTCGCGCACTTATTACCGTCATCCACATCCACCACTACAATCTCTTTCTCGAATAACAACAACAACCCTACCCCAATAATGCTTCAACAAACCCCAACCGAGGGTGCAACTGCAACTGCAACTGCAAATGTAAACCCTTACGGTGAGAAGCGGAACTCCATGGCGGCGATGAGGGAGATGATATTCAGGATGGCGGCGATGCAGCCGATACACATAGACCCGGAGTCGGTGAAGCCGCCGAAGCGGAGGAACGTGAAGATTTCGAAGGACCCTCAGAGCGTGGCGGCGCGCCACCGCAGAGAGAGGATCAGCGAGAGGATAAGGATACTGCAGAGACTGGTCCCTGGAGGGACCAAGATGGACACTGCGTCCATGTTGGATGAGGCCATTCACTACGTCAAGTTTCTCAAAACGCAGGTTCAGTCACTGGAACGCGCTTCCGCTAACAATATTAGGCCACTTGTCGGTGTTAGCGCACCAGGGATAGGGTTCCCAGTTGCTATGTCTGGTCCTAGTAGGACTGCTTCCACTTCCAGTTCCAATTCCACACCTTATCTTCCTCTGCCTAATAGATATGATTAA | 828 | 0.5085 | MDTTEQLKPEEEEQQQMDIMTVMMQHLPQFSEPYSETNTMEGFHPPEEFYGNDNNIRSGSTMPLADLLDNSPPSPIPWSSYSFAHLLPSSTSTTTISFSNNNNNPTPIMLQQTPTEGATATATANVNPYGEKRNSMAAMREMIFRMAAMQPIHIDPESVKPPKRRNVKISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKTQVQSLERASANNIRPLVGVSAPGIGFPVAMSGPSRTASTSSSNSTPYLPLPNRYD | 275 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Spst9g00464 | 275 | Gene3D | - | 168 | 235 | IPR036638 | GO:0046983 | |
Spst9g00464 | 275 | PANTHER | TRANSCRIPTION FACTOR HEC3-RELATED | 23 | 260 | IPR045843 | GO:0003700|GO:0006355 | |
Spst9g00464 | 275 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 173 | 227 | IPR036638 | GO:0046983 | |
Spst9g00464 | 275 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 169 | 218 | IPR011598 | GO:0046983 | |
Spst9g00464 | 275 | SMART | finulus | 175 | 224 | IPR011598 | GO:0046983 | |
Spst9g00464 | 275 | MobiDBLite | consensus disorder prediction | 252 | 275 | - | - | |
Spst9g00464 | 275 | MobiDBLite | consensus disorder prediction | 252 | 269 | - | - | |
Spst9g00464 | 275 | FunFam | BHLH transcription factor | 172 | 235 | - | - | |
Spst9g00464 | 275 | Pfam | Helix-loop-helix DNA-binding domain | 179 | 218 | IPR011598 | GO:0046983 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Spst9g00464 | Spst-Chr9 | 4069561 | 4070388 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Spst9g00464 | 135 | 245 | Basic Helix-Loop-Helix Transcription Factor Gene Family | AT3G50330 | 79.279 | 2.18e-47 | 156 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | bHLH | Spst9g00464 | HLH | 1.8e-06 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Spst9g00464 | - | - | vum:124831293 | 399.438 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Spst9g00464 | 9 | 4069561 | 4070388 | Spst9g00464 | 9 | 4069561 | 4070388 | ECH |