Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00446 ATGGTGACAGCATCAGCATACGAGGAGAGTCGTCGCAAGAGAATGGAGGAAAACAGAAAGAGAATGGAAGCCCTCAATCTCCCTCTCCTCTCTCAAGCTCTTCACAAGTCTCCTTCTCCCAAATCTTCACAGTTAAAACCTGCCGCCAAGAATCGCACCATTCAGAAAGAGGTGGTTGTGGTGAGAAGATCAAGCCGTGTGGCCAACATGCCCTCTCCAATTTACAAAGAAGTGGTTATTGACCGAGTCACTATACCTCGAAGAAGAAGTACCGTTAATGGTTACAATAGGCACAGGGATTATGCGAATAGGGTATACGCCTCGGATGAAGCCAGAGAGGAAGCATTGGAGAAAGCAGAGAAGTTAATGTCCGGTTTAGAGTCTGATTATCCAGCCTTCATAAAGTCTATGCTCCAGTCTCACATTAGTGGGGGTTTCTGGCTGGGCCTTCCAGTCCATTTCTCCAAGAGCAATCTGCCTAAAAAGGATGAAGTGATGACTCTGATTGACGAAGATGGGAATGAGTATCCAACAATATATTTGCCCCGTAAAACAGGACTTAGTGGGGGATGGAAAGGTTTTGCTGTTGCTCATGACCTAGCTGATGGGGATGCTTTAATTTTCCAATTAATTAAGCGCACTGCATTCAAGGTGTACATTATTAGAGCGAATAGTTCTTCAGAGGATAAACAGCTAAAGATCTCTATTGTAGTGGAGGGAACGTTTGTGGGTTCATTTTTCATAGCTGGCCTTAGCTTGGCTTCTTGGCCAAGTGAAGAGCAGAAAGGCAGAAAATAG 798 0.4486 MVTASAYEESRRKRMEENRKRMEALNLPLLSQALHKSPSPKSSQLKPAAKNRTIQKEVVVVRRSSRVANMPSPIYKEVVIDRVTIPRRRSTVNGYNRHRDYANRVYASDEAREEALEKAEKLMSGLESDYPAFIKSMLQSHISGGFWLGLPVHFSKSNLPKKDEVMTLIDEDGNEYPTIYLPRKTGLSGGWKGFAVAHDLADGDALIFQLIKRTAFKVYIIRANSSSEDKQLKISIVVEGTFVGSFFIAGLSLASWPSEEQKGRK 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00446 265 Gene3D - 107 226 IPR015300 -
Spst9g00446 265 MobiDBLite consensus disorder prediction 32 50 - -
Spst9g00446 265 SUPERFAMILY DNA-binding pseudobarrel domain 127 224 IPR015300 -
Spst9g00446 265 CDD B3_DNA 131 222 IPR003340 GO:0003677
Spst9g00446 265 ProSiteProfiles B3 DNA-binding domain profile. 133 224 IPR003340 GO:0003677
Spst9g00446 265 Pfam B3 DNA binding domain 133 223 IPR003340 GO:0003677
Spst9g00446 265 MobiDBLite consensus disorder prediction 32 51 - -
Spst9g00446 265 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 44 225 IPR044837 -
Spst9g00446 265 SMART B3_2 133 224 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g00446 Spst-Chr9 3947530 3951523 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g00446 52 228 B3 DNA Binding Superfamily AT5G42700 60.112 3.50e-66 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Spst9g00446 B3 7.1e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g00446 - - gmx:100797091 363.229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g00446 9 3947530 3951523 Spst9g00446 9 3947530 3951523 ECH