Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00433 ATGGAAGCTTTGAACAGAAGCTCCTCCACCACTTCTTCTTCCTCCGACTCCTCCTCTTCCGACTCCAACCATAGGAACCCCAACAATCCCCACAGAATCAAAGGCCCATGGAGCGCTGAGGAGGATCGGATCCTCACCCGCCTCGTCGACCGATACGGTGCCCGCAACTGGTCCCTCATCAGCCGCTACATTAAGGGCAGGTCCGGAAAGTCCTGCCGCCTGCGGTGGTGCAACCAGCTCAGCCCCGCCGTCGAGCACCGCCCCTTCTCCGCCCAAGAGGACGACACCATCATCGCCGCCCACGCCCAGTACGGTAACAGATGGGCCACCATTGCCCGAATGCTACCGGGCCGAACCGATAACGCCGTTAAGAACCACTGGAACTCCACGCTCAAGCGCAGAGCCAAGGCTTTCATTAACATTAACGGAAACAATGGCAACAACGAAGGGGCCGCTTCTTCTTCCGCTCCTTCTCGTTCCTTCGAGGACGACCCGTTGACCGCGTTGACTCTCGCTCCCCCAGGTATCGCCAACGCCGCCGTTGCCGAGGACGCTGTGCCGGACCACGGTGCCTCGCCGGAGAGTGCGCCGGCGGGGTTTTGGGATATGATGAGAGATGTGATCGCTAGGGAAGTGAGGGAATATGTGTCTTCCAATTTTTCTGATAACTCGGGTTTTCATTAA 684 0.5848 MEALNRSSSTTSSSSDSSSSDSNHRNPNNPHRIKGPWSAEEDRILTRLVDRYGARNWSLISRYIKGRSGKSCRLRWCNQLSPAVEHRPFSAQEDDTIIAAHAQYGNRWATIARMLPGRTDNAVKNHWNSTLKRRAKAFININGNNGNNEGAASSSAPSRSFEDDPLTALTLAPPGIANAAVAEDAVPDHGASPESAPAGFWDMMRDVIAREVREYVSSNFSDNSGFH 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00433 227 MobiDBLite consensus disorder prediction 1 37 - -
Spst9g00433 227 MobiDBLite consensus disorder prediction 142 161 - -
Spst9g00433 227 MobiDBLite consensus disorder prediction 142 164 - -
Spst9g00433 227 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 29 84 IPR017930 -
Spst9g00433 227 PANTHER MYB PROTEIN-RELATED 34 156 - -
Spst9g00433 227 Gene3D - 87 158 - -
Spst9g00433 227 MobiDBLite consensus disorder prediction 1 26 - -
Spst9g00433 227 ProSiteProfiles Myb-like domain profile. 29 80 IPR001005 -
Spst9g00433 227 Pfam Myb-like DNA-binding domain 37 94 - -
Spst9g00433 227 SMART sant 33 82 IPR001005 -
Spst9g00433 227 SMART sant 85 133 IPR001005 -
Spst9g00433 227 CDD SANT 88 131 IPR001005 -
Spst9g00433 227 Gene3D - 33 85 - -
Spst9g00433 227 ProSiteProfiles Myb-like domain profile. 81 131 IPR001005 -
Spst9g00433 227 FunFam MYB transcription factor 34 85 - -
Spst9g00433 227 SUPERFAMILY Homeodomain-like 31 127 IPR009057 -
Spst9g00433 227 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 86 135 IPR017930 -
Spst9g00433 227 CDD SANT 36 78 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g00433 Spst-Chr9 3852500 3853183 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g00433 32 138 MYB Transcription Factor Family AT5G67300 75.701 2.34e-57 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Spst9g00433 Myb_DNA-bind_6 7.9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g00433 - - vra:106761536 356.295