Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00425 ATGGCCTCGGGCTGCTTTCTATTCCTCTCCCTATTCCTCCTCTCGTCATTATCCTCCTCCTCCTCCTTTGCACTTTCCGATGTTGAAGCCTCTTTCATTGCTCGTCGCCAGTTGATGCACCTGAGTGAGAATGAGGATTTGCCAGACAACTACGTAGAGAACTATAAGACAACCCACAACTTCTCTAACCCTAGGCTAAAAGCTGCCTACATTGCTCTTGAGGCATGGAAAAAAGCTATCTACTCTGACCCATCAAATTTCACGGCAAATTGGTCGGGCCCAGATGTTTGCTCTTACAATGGGGTTTATTGTCATTTTGCTTTAGATGACCAAAAGCTCGAAGTTGTGGCTGGGATTGACCTTAACCATGCAGACATCGCAGGTTACCTTCCCCCAGAATTTGGTCTGTTAGCTGACATTGGAGTTTTGCATATAAACTCAAACAGGTTTTGTGGGGTTATCCCAAACACCTTCACCAGGCTTAAGCTTCTCTTTGAGCTAGACATCAGCAACAACCGGTTTGTTGGGAAGTTCCCTGACCCCGTGCTTTCAGTGCCAGACCTCAGATACCTTGACATCAGGTTCAATGACTTTGAGGGCGAAGTGCCTTCAGAGCTTTTCACCAAAACCCTCGACGCTTTGTTTATGAACAATAACCGCTTCACCTCCACAATTCCTGAGAACCTGGGATCTATTCCGGCCACGGTTGTGGTTATCGCCAATAACAATTTCACAGGGTGCGTGCCTTCGAGCATTGGGGAGATGAAGAAATTGAACGAGTTTGTTTTGACCAACAACAACCTCACCGGTTGCTTGCCAACAGAAATTGGAAAACTGGAACAAGTTACGGTGTTTGACATCAGCAAGAACAACTTGGTTGGCGTGTTGCCGAGGACCTTAAATGGGCTCAAGAATGTGGAGCATTTGTCGATTTCGCATAACAAGTTGACAGGCTTTGTCCCGCGTAATGTTTGCAGCTTGCCCCATTTGTTGAACTTCACATTCTCTGATAACTATTTCAATGGAGAGGAAGAAGGTTGCGTGCCTCAAAAGAAAGAGCCTGTATTGGATGATGAGAACAACTGCATACCAGATAGGCCAAAGCAAAAGCAATCAAACGCTTGCAATGCGGTGATAAGCAAGCCTGTGGATTGTAGCAAAACCATGTGTGGCCATGGGGGCAGCTCCACTCCATCATCTTCCACTCCTCCAACAACACCATCTAAACAATCACCAACTCCTCCTAAGAGTGAGAAATCAACACCCTCACCATCACCGAAGCCACAATCTCCACCTACCACCACTCCTCCAACATCTAAGTCACAACCACCACCTACCCCTACCCCTACCCCTACCCCAACTCCAAAGCAAGATGAACCCACTCCCCCGTCACCAAAGCCCGAAGAACCCAAACAGACCCCTTCCACTCCTCAATCCCCAACGCCTGAAGAACCCAAAGATACTCCATCCACTCCTCCATCACCGAAGCCTCAAGAACCCACCCCTTCCACTCCTCAATCACCCACGCCCGAAGAACCCAAACCTACACCTCCATCACCCAAAGCATCACCACCAGAAGAGGACGATTCCCACAAGGAATCACCCGGGAACCGACAAAGATCTCCACCACCACCTGTCCAGTCTCCTCCACCACCTGTCTACTCCCCACCACCACCTGTCCCCTCTCCACCACCCCCTGTTCAATCCCCACCACCACCTGTCCTCTCTCCACCACCACCTGTCCACTCTCCACCACCACCTGTTCACTCTCCACCTCCACCTGTTCACTCACCTCCACCACCGGTTCACTCACCACCACCTCCCGTCCATTCTCCTCCTCCACCTGTTTACTCCCCTCCACCACCTGTCCATTCTCCTCCTCCACCTGTTTACTCTCCTCCACCTCCTGTCCATTCTCCTCCTCCCCCAGTTTACTCTCCACCACCACCTGTCCATTCTCCTCCTCCCCCTGTTCACTCTCCACCTCCCCCAGTTTACTCTCCACCACCACCTGTTTACTCTCCTCCACCACCGGTTTACTCTCCACCACCACCCGTGTACTCTCCACCACCTCCAGTGCAGTCTCCACCGCCACCAGTGCAGTCTCCACCACCTGCTTCACCTCCTCCTACGGAAGACGTTTTTCTTCCCCCTCACTTCGGCTCTTCTTATGCTTCACCCCCTCCACCTATCATTGCCGGCTACTAA 2208 0.51 MASGCFLFLSLFLLSSLSSSSSFALSDVEASFIARRQLMHLSENEDLPDNYVENYKTTHNFSNPRLKAAYIALEAWKKAIYSDPSNFTANWSGPDVCSYNGVYCHFALDDQKLEVVAGIDLNHADIAGYLPPEFGLLADIGVLHINSNRFCGVIPNTFTRLKLLFELDISNNRFVGKFPDPVLSVPDLRYLDIRFNDFEGEVPSELFTKTLDALFMNNNRFTSTIPENLGSIPATVVVIANNNFTGCVPSSIGEMKKLNEFVLTNNNLTGCLPTEIGKLEQVTVFDISKNNLVGVLPRTLNGLKNVEHLSISHNKLTGFVPRNVCSLPHLLNFTFSDNYFNGEEEGCVPQKKEPVLDDENNCIPDRPKQKQSNACNAVISKPVDCSKTMCGHGGSSTPSSSTPPTTPSKQSPTPPKSEKSTPSPSPKPQSPPTTTPPTSKSQPPPTPTPTPTPTPKQDEPTPPSPKPEEPKQTPSTPQSPTPEEPKDTPSTPPSPKPQEPTPSTPQSPTPEEPKPTPPSPKASPPEEDDSHKESPGNRQRSPPPPVQSPPPPVYSPPPPVPSPPPPVQSPPPPVLSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVYSPPPPVHSPPPPVYSPPPPVHSPPPPVYSPPPPVHSPPPPVHSPPPPVYSPPPPVYSPPPPVYSPPPPVYSPPPPVQSPPPPVQSPPPASPPPTEDVFLPPHFGSSYASPPPPIIAGY 735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00425 735 PRINTS Proline rich extensin signature 397 409 - -
Spst9g00425 735 PRINTS Proline rich extensin signature 444 465 - -
Spst9g00425 735 PRINTS Proline rich extensin signature 412 428 - -
Spst9g00425 735 PRINTS Proline rich extensin signature 432 444 - -
Spst9g00425 735 Gene3D Ribonuclease Inhibitor 236 377 IPR032675 -
Spst9g00425 735 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 7 526 - -
Spst9g00425 735 MobiDBLite consensus disorder prediction 351 365 - -
Spst9g00425 735 Gene3D Ribonuclease Inhibitor 70 235 IPR032675 -
Spst9g00425 735 MobiDBLite consensus disorder prediction 538 667 - -
Spst9g00425 735 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 249 343 - -
Spst9g00425 735 SUPERFAMILY L domain-like 75 362 - -
Spst9g00425 735 MobiDBLite consensus disorder prediction 405 523 - -
Spst9g00425 735 MobiDBLite consensus disorder prediction 389 667 - -
Spst9g00425 735 Pfam Leucine rich repeat 281 338 IPR001611 GO:0005515
Spst9g00425 735 Pfam Leucine rich repeat N-terminal domain 72 104 IPR013210 -
Spst9g00425 735 MobiDBLite consensus disorder prediction 684 735 - -
Spst9g00425 735 FunFam Leucine-rich repeat extensin-like protein 1 70 231 - -
Spst9g00425 735 MobiDBLite consensus disorder prediction 684 715 - -
Spst9g00425 735 MobiDBLite consensus disorder prediction 390 404 - -
Spst9g00425 735 MobiDBLite consensus disorder prediction 351 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g00425 Spst-Chr9 3778102 3780309 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g00425 4 527 Trihelix Transcription Factor Family AT3G19020 50.450 1.01e-173 520
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g00425 - - gmx:100780677 613.994