Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00422 ATGTACACCACTCCACACGCAGTAATGCCAACCTTTGCACCCTTTCCAGAGCCAGACCTCTCCTTAAACATCAGCCCACCCTTCACTTCAGATTTTGACGGTAAACAAGTGGAAACAAGCTGCAACGGATTAACATTAACCACCAAAACGCTTTACAGCGATATGTGCTCAACATCGGATTCTGGAAGCAGTGGAAGCGATTTAAGCCACGATAATGGGTTTTGCCCCACTGTCTACAACCTTGGTCATCGCGAACCGACTCTGAGCTTAGGCTTCGGAAGGGAAAATTTGAATCCTTATCCTATCCAAGGAACAGTGTCGAAAAACTTCAATCACCTGTACAACTATCAACCTCAGATCAATACCCTTGATTTCAAACGAAATGCTAGAGGCTTTCAAGGTGTAAAAAGAAGCTCCAGAGCTCCTAGAATGCGATGGACTACGACCCTCCATGCTCATTTCGTTCACGCTGTTCAGCTTCTTGGTGGTCATGAAAGGGCAACTCCGAAGTCTGTGTTAGAGTTAATGAACGTTAAGGATCTAACTCTAGCTCATGTGAAGAGTCACTTGCAGATGTATAGAACAGTGAAGAGCTCTGACAAAAGCAGCGCAGGTTATGGGCAGACAGATATAGGGTTTAGCCAAAAGCCAGGGATTGTCGATCTGCATGGAGCCTTAGCTTGTGAGAGACCGAATTTGCCACAGCCACTGCTAAAATTCCACAGGGCGTCATGGCATTCATCGATGGAGACAAATTCAATAAATTATATGCAGAAACCCATTATGAATTCAATGTATTCTCATCTCAAAGGAAACCAAACCACGGTGGGTGGACAGCATTATGGAGTTCTGTCGAATTGCATGGAGAAGAAATTGGATTCTTGCTCTTTGTCACGTTCTGATATGACGCTAGACCTAGAATTTACCCTTGGAAGGCCCACTAGCTGTAAACAGACCTCGCAGAATCAAGAGAATTAA 978 0.4458 MYTTPHAVMPTFAPFPEPDLSLNISPPFTSDFDGKQVETSCNGLTLTTKTLYSDMCSTSDSGSSGSDLSHDNGFCPTVYNLGHREPTLSLGFGRENLNPYPIQGTVSKNFNHLYNYQPQINTLDFKRNARGFQGVKRSSRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKSSDKSSAGYGQTDIGFSQKPGIVDLHGALACERPNLPQPLLKFHRASWHSSMETNSINYMQKPIMNSMYSHLKGNQTTVGGQHYGVLSNCMEKKLDSCSLSRSDMTLDLEFTLGRPTSCKQTSQNQEN 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00422 325 SUPERFAMILY Homeodomain-like 139 196 IPR009057 -
Spst9g00422 325 NCBIfam myb-like DNA-binding domain, SHAQKYF class 142 195 IPR006447 GO:0003677
Spst9g00422 325 FunFam Myb family transcription factor 140 198 - -
Spst9g00422 325 Gene3D - 141 198 - -
Spst9g00422 325 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 18 316 IPR044847 GO:0000976|GO:0006355|GO:0010158
Spst9g00422 325 Pfam Myb-like DNA-binding domain 143 194 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g00422 Spst-Chr9 3763704 3766869 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g00422 116 216 G2-like Transcription Factor Family AT5G42630 74.257 2.96e-47 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Spst9g00422 Myb_DNA-binding 1.4e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g00422 - - vra:106760469 550.051
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g00422 9 3763704 3766869 Spst9g00422 9 3763704 3766869 ECH
Spst8g02107 8 29421085 29424004 Spst9g00422 9 3763704 3766869 PCT