Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00406 ATGGCCAGTGGGTTTGGGGAATCAACAGAGAGGTCACCCCCAAGCCCTTCATACTTCAACAACAATAATAACACTGATGCTGGAAATTTTGAATGCAACATTTGCCTTGAATTAGCGCAGGACCCCATAATTACTTTGTGTGGTCATCTTTTCTGCTGGCCTTGTCTTTATAAATGGCTTCACCTTCACTCACAGTCACGAGAATGCCCGGTTTGCAAGGCCCTCGTGGAGGAGGAGAAGTTGGTTCCCTTGTATGGGAGAGGAAAGACCTCCACTGATCCGAGATCAAAATCTATTCCAGGCATTAATATCCCCCATCGTCCAGCTGGTCAGAGGCCTGAAACTGCTCCTCCACCGGAAACAAATCATTTTCATCAACATGGGTTTGGATTTATGGGTGGGTTGGGAGGATTTGCACCACCGCCAATGGCAACGACAAGATTTGGGAATTTTGGATTGTCTGCAGCTTTCGGTGGTTTTATACCATCCCTATTCAACTTTCAGTTGCATGGGTTTCATGATGGGGCCATGTATGGGGGAGCGTCTGGTTTTCCTCATGGATTTTCTAATACATTTCATGGTGTCCATGCTCATGGATATCCTCTTCGCACTCATCAAGGGCAACAAGATTATTATTTGAAGAAGCTGCTTCTAGTTGTTCTTTTCTGTGTTCTTCTTGCTTTTATTTGGCAATAG 696 0.4511 MASGFGESTERSPPSPSYFNNNNNTDAGNFECNICLELAQDPIITLCGHLFCWPCLYKWLHLHSQSRECPVCKALVEEEKLVPLYGRGKTSTDPRSKSIPGINIPHRPAGQRPETAPPPETNHFHQHGFGFMGGLGGFAPPPMATTRFGNFGLSAAFGGFIPSLFNFQLHGFHDGAMYGGASGFPHGFSNTFHGVHAHGYPLRTHQGQQDYYLKKLLLVVLFCVLLAFIWQ 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00406 231 MobiDBLite consensus disorder prediction 1 20 - -
Spst9g00406 231 SUPERFAMILY RING/U-box 29 85 - -
Spst9g00406 231 ProSitePatterns Zinc finger RING-type signature. 47 56 IPR017907 -
Spst9g00406 231 CDD RING-HC_AtRMA-like 30 74 - -
Spst9g00406 231 SMART ring_2 32 72 IPR001841 -
Spst9g00406 231 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 20 226 IPR045103 GO:0005783|GO:0006511|GO:0061630
Spst9g00406 231 ProSiteProfiles Zinc finger RING-type profile. 32 73 IPR001841 -
Spst9g00406 231 MobiDBLite consensus disorder prediction 86 117 - -
Spst9g00406 231 Pfam Zinc finger, C3HC4 type (RING finger) 32 72 IPR018957 GO:0046872
Spst9g00406 231 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 16 86 IPR013083 -
Spst9g00406 231 FunFam E3 ubiquitin-protein ligase RNF185 isoform X2 16 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g00406 Spst-Chr9 3602051 3602746 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g00406 30 214 C3H Transcription Factor Family AT1G19310 70.000 6.65e-88 258
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g00406 K10666 - gmx:100527488 409.838
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g00406 9 3602051 3602746 Spst2g00763 2 6419991 6420686 ECH
Spst9g00406 9 3602051 3602746 Spst9g00406 9 3602051 3602746 ECH