Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00391 ATGACGGAACCTCAGAGTCTTTCACCATTGGCACGTTCGGCAGCGTCAGAAATCGAACCACCACCTCAACCTCTTTCACCTCCAAAAAAGAAACGAAGCCTTCCTGGAATGCCAGATCCAGATGCTGAAGTGATTGCTTTGTCACCGAAGACACTGTTGGCGACGAACCGTTTCGTTTGCGAGATCTGTAACAAAGGGTTTCAACGCGATCAGAACCTGCAACTTCACCGGCGCGGGCACAACTTGCCGTGGAAGCTGCGGCAGCGAGGGAGCAAGGAACCGCGGAAGAAAGCGTACGTGTGCCCCGAGCCTTCGTGTGTCCACCACAACCCCGCCAGGGCGCTCGGCGACCTCACCGGCATCAAAAAGCACTTCTGCAGAAAACACGGCGAGAAAAAGTGGAAATGCGAACGCTGCTCGAAGAAATACGCCGTACAGTCGGATTGGAAAGCTCACATGAAAACTTGTGGCACCAGAGAGTACCGATGCGACTGCGGCACCTTGTTCTCTAGGAGGGACAGTTTCATCACGCACAGAGCATTTTGCGATGTGTTAGCGCAAGAGAGCGCCAGGACTCAGGTCCAAGCCCAAGCCCAGGCCCAGACCCAGACCCAGAATGGTAGCACTAGCGACGTTGACGCGGCTTCTTCGCCCCCTGCGCCTCCACTTACTCCTTCTGCGTCTGTGGTGTCTCCAACCTTGTCCATTCAGAGCTCAGAAATTCCAGAAAACCCAACAAAGCTGTCACCCATGTCTCCAAACGCAACGCGCTTGGTGACAAGCAGCGCCCCTTCAAGTGCCACTGCTTGCACCACTGTTTTTGCAAGTGTGTTGGCACCGTCCACAACAACAACAACTCAGTCACAATCTCATTCACAGTCACCGTCAACTTCCTCATTCTTCAACCTCATGTCAAACTTGGCTCGCTCGGACAACCCCAATGCCATCTCTAATCTGATAGAACCCACATCCCTCTCCCTCTCCTCACCGCTCTATCTCTCCAACAATGACTCCCCACACTTCACAACATCTCCTCAACCTGCACTATCCGCCACTGCATTACTCCAAAAAGCAGCTCAAATGGGTGCATCCAATGCTTCCCTTCTTCGTGGCTTAGGCTTAGCAACAACATCATCATCATCATCCTTCGGGAAAGACGAGGATTTTAACATCAAAGCAACCACAGCAGCACAATGGAACGGGCAAGTAAAGCAAGAGAATCAGCCTGTGGTGGACAACCTTGGGCTTGGGCTTCACGGTGGGAGTGGAAGTGTGACAGATGTGATGATGGACCCTTCTATCCCATTTGTGGGCCAGCCCATGACCCGTGATCTTCTCGGTCTTGGCATTGGTGGCGGAGCAAGCAGGGGTGGACTCTCTGCTTTGCTCACCTCTTTCGGAGGGAACTTTGATTCACCCGGTGATGGAGGAGTTCATCAGTAG 1443 0.5308 MTEPQSLSPLARSAASEIEPPPQPLSPPKKKRSLPGMPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRGSKEPRKKAYVCPEPSCVHHNPARALGDLTGIKKHFCRKHGEKKWKCERCSKKYAVQSDWKAHMKTCGTREYRCDCGTLFSRRDSFITHRAFCDVLAQESARTQVQAQAQAQTQTQNGSTSDVDAASSPPAPPLTPSASVVSPTLSIQSSEIPENPTKLSPMSPNATRLVTSSAPSSATACTTVFASVLAPSTTTTTQSQSHSQSPSTSSFFNLMSNLARSDNPNAISNLIEPTSLSLSSPLYLSNNDSPHFTTSPQPALSATALLQKAAQMGASNASLLRGLGLATTSSSSSFGKDEDFNIKATTAAQWNGQVKQENQPVVDNLGLGLHGGSGSVTDVMMDPSIPFVGQPMTRDLLGLGIGGGASRGGLSALLTSFGGNFDSPGDGGVHQ 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00391 480 MobiDBLite consensus disorder prediction 1 42 - -
Spst9g00391 480 MobiDBLite consensus disorder prediction 195 215 - -
Spst9g00391 480 Gene3D Classic Zinc Finger 112 193 - -
Spst9g00391 480 ProSiteProfiles Zinc finger C2H2 type domain profile. 58 80 IPR013087 -
Spst9g00391 480 SUPERFAMILY beta-beta-alpha zinc fingers 57 155 IPR036236 -
Spst9g00391 480 Pfam Zinc-finger of C2H2 type 58 80 - -
Spst9g00391 480 MobiDBLite consensus disorder prediction 195 260 - -
Spst9g00391 480 SMART c2h2final6 134 154 IPR013087 -
Spst9g00391 480 SMART c2h2final6 99 129 IPR013087 -
Spst9g00391 480 SMART c2h2final6 58 80 IPR013087 -
Spst9g00391 480 MobiDBLite consensus disorder prediction 227 260 - -
Spst9g00391 480 FunFam protein indeterminate-domain 12-like 37 105 - -
Spst9g00391 480 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 20 453 IPR031140 -
Spst9g00391 480 FunFam protein indeterminate-domain 5, chloroplastic-like 112 191 - -
Spst9g00391 480 Gene3D Classic Zinc Finger 38 105 - -
Spst9g00391 480 ProSitePatterns Zinc finger C2H2 type domain signature. 60 80 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g00391 Spst-Chr9 3460289 3462860 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g00391 22 468 IDZ Gene Family AT3G50700 51.770 4.18e-132 388
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Spst9g00391 zf-met 0.0034 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g00391 K25869 - gmx:100800089 670.618
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g00391 9 3460289 3462860 Spst9g00391 9 3460289 3462860 ECH