Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00373 ATGGCCTCAAGCCAGAGTTGGACACCGAAGCAGAACAAAAGATTTGAGAATGCTCTTGCGATCTTCGACAAGGACACCCCAGATAGGTGGCACAACCTGGCCAGGGCCGTCGGAGGAAAATCTGTGGAAGATGTGAAAAGGCATTATGAGAAGCTGGTGGAAGACGTGAAGCAGATTGAGGAAGGCCATGTGCCCCTTCCCAATTATCGAAGTGTTGCAGCTATGGGGAGCAGCATCAGAGGTTATGGTTACATTGATGAAGAAAACAGGTTATTATTTATTCAACCATTGATGAAGATTCTGAGTCTCCATTGA 315 0.4667 MASSQSWTPKQNKRFENALAIFDKDTPDRWHNLARAVGGKSVEDVKRHYEKLVEDVKQIEEGHVPLPNYRSVAAMGSSIRGYGYIDEENRLLFIQPLMKILSLH 104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00373 104 SUPERFAMILY Homeodomain-like 5 60 IPR009057 -
Spst9g00373 104 Gene3D - 1 66 - -
Spst9g00373 104 ProSiteProfiles SANT domain profile. 2 57 IPR017884 -
Spst9g00373 104 FunFam Transcription factor SRM1 1 66 - -
Spst9g00373 104 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 3 74 IPR044636 GO:0003700
Spst9g00373 104 CDD SANT 6 53 IPR001005 -
Spst9g00373 104 Coils Coil 42 62 - -
Spst9g00373 104 SMART sant 3 55 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g00373 Spst-Chr9 3357171 3357623 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Spst9g00373 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g00373 - - vra:106761704 175.637
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g00373 9 3357171 3357623 Spst9g00373 9 3357171 3357623 ECH
Spst8g01909 8 24299339 24299918 Spst9g00373 9 3357171 3357623 PCT