Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00359 ATGTTCCTCATCTTTCTGATCCTGACAACCATACCTTTCCTTTATAGAGGTGAAAAAGATAATAGTGATGATCAGCCAGACGAAAATAATTTTAGGAAAGGGCAATGGACAGCAGAAGAAGATGCAGTTTTGGCAGCATATGTGACAAAACATGGAACAGGAAATTGGAACTTAGTCCAGAAAAACACAGGACTGGCTCGTTGTGGGAAAAGTTGTCGTTTAAGGTGGACAAATCATCTAAGACCAGGTTTGAGAAGAGGTCCATTCAGCGAAGAAGAACAAAGTAAAGTCATTGAGTTACATGCGTTATGGGGAAATAAATGGTCCAAGATAGCAGAGAAGTTAACTGGACGAACAGACAATGAAATAAAGAATTTTTGGAACACAAGAATAAAGAAAAGAAAACGATTGGGCTTATCATGCTACTCAGATAAGCTACAATCAGAAGCTAGTGTAGAAGCTTTCGCTCCCTCCTCCGATAACTCAGAAGCAGGTCCATCATCAAATGTACCACATTTGACATTCAACAATTTCGATACCAACGGTCAAAATCAGCCTCAACCATATTTTCATAATGGTTATTTTGAGACTGAGGGGAACTTGAGTTGTTGTCAGCTTAACACTGATAACTGCAGCAATCAATATCTACCTTACAACAATCAGTTTCAAGGTTATTCCATGGGTTATTGCATGGATGATGAAGGTGCATCTCACCACCCTTCTTACACGTTTGATGAAGGTGCATGTTCAAGTGACCACCCTTTTGACACGTTTGATGAAGGTGCATGTTCCAGCTGCAGTGACCACCCTTTTTACACGTTTGATGAAGGTGCATGTTCATGTGGCCACCCTTTTTACACGTTTGATGAAGGGGCATGTTCAAGTGACCACCCTTTTTACACGTTTGATGAAGGTGTATGTTCAATTGACCACCCTTTTTACACGTTTGATGAGGGTGCATGTTCAAGTGACCACCACCCTTTTTACACGTTTGATGAAGGTGCATGTTCAAGAGACCACCCTTTTTACACGTTTGATGGAGGTGCATGTTCAAGTGACCAACCTAATTACATGGTTAATGAAGTTGCATATGACCCTCATTGCATGGTTGATGAAGGTTTGGTATCAGAAATGCCTTTATGTTCAAGTGGTCCTTGTTTGGGATCAGAAATACCTCTACATTCAAGTGACCCTTGTTCCGTATCAGAAATGACTCTACGTTCAAGTGAACCTTGTTCCGTATCAGAAATGCCTCTACGTCCAAGTGGTCCCTGTTTGGGATCAGAAATACCTCTACGTTCAACTGACCCATTTTCCGTATCAGAAATGCCTCTATGTTTAAGCGACCCTTGTTCGGTATCAAACATACCTCTATGTTCAAGTGGTCCTTGTTCGGTATCAGAAATACCTCTATTACCATCATCATCCACAGTTGATGACTCAATATTGAATGACTTATCATTTCCATCATTTGATGATCCATCATTTGATGATCCATCACTTTATGACCAATACTCATCGTGGTCACTACCACCGGATCACACATCATTATCGTTGCCACTATTGGATGACTTGTCAACACCCTTGTATGACTCATTGATAGCAAAGGAGGATATTTCGACAAATCAGTACCATGAAACACTTCCTTCTCTCACCAATGAGTATCCATAA 1671 0.4069 MFLIFLILTTIPFLYRGEKDNSDDQPDENNFRKGQWTAEEDAVLAAYVTKHGTGNWNLVQKNTGLARCGKSCRLRWTNHLRPGLRRGPFSEEEQSKVIELHALWGNKWSKIAEKLTGRTDNEIKNFWNTRIKKRKRLGLSCYSDKLQSEASVEAFAPSSDNSEAGPSSNVPHLTFNNFDTNGQNQPQPYFHNGYFETEGNLSCCQLNTDNCSNQYLPYNNQFQGYSMGYCMDDEGASHHPSYTFDEGACSSDHPFDTFDEGACSSCSDHPFYTFDEGACSCGHPFYTFDEGACSSDHPFYTFDEGVCSIDHPFYTFDEGACSSDHHPFYTFDEGACSRDHPFYTFDGGACSSDQPNYMVNEVAYDPHCMVDEGLVSEMPLCSSGPCLGSEIPLHSSDPCSVSEMTLRSSEPCSVSEMPLRPSGPCLGSEIPLRSTDPFSVSEMPLCLSDPCSVSNIPLCSSGPCSVSEIPLLPSSSTVDDSILNDLSFPSFDDPSFDDPSLYDQYSSWSLPPDHTSLSLPLLDDLSTPLYDSLIAKEDISTNQYHETLPSLTNEYP 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00359 556 Gene3D - 88 134 - -
Spst9g00359 556 SMART sant 85 133 IPR001005 -
Spst9g00359 556 SMART sant 32 82 IPR001005 -
Spst9g00359 556 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 28 80 IPR017930 -
Spst9g00359 556 SUPERFAMILY Homeodomain-like 31 127 IPR009057 -
Spst9g00359 556 Gene3D - 33 85 - -
Spst9g00359 556 ProSiteProfiles Myb-like domain profile. 28 80 IPR001005 -
Spst9g00359 556 CDD SANT 88 129 IPR001005 -
Spst9g00359 556 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 81 135 IPR017930 -
Spst9g00359 556 CDD SANT 36 80 IPR001005 -
Spst9g00359 556 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 19 236 - -
Spst9g00359 556 FunFam MYB-related transcription factor 32 85 - -
Spst9g00359 556 ProSiteProfiles Myb-like domain profile. 81 131 IPR001005 -
Spst9g00359 556 Pfam Myb-like DNA-binding domain 33 80 IPR001005 -
Spst9g00359 556 Pfam Myb-like DNA-binding domain 86 129 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g00359 Spst-Chr9 3289524 3292831 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g00359 16 150 MYB Transcription Factor Family AT2G26960 60.741 4.04e-54 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Spst9g00359 Myb_DNA-binding 8e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g00359 K09422 - vra:106763259 224.942