Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00322 ATGGCCGGGTTCTTCTCTCTAGGTGGAACTAGAAGGGGAGGCCCACAAAACAAGGAAGAGGAGGAGGTAGAAAAAAGAGATAACAATAACAACACCAACAACGGGAATAACCTACTGTTGTTCAGGAACGAGGAGATCTACAACAAGGGGTTCGAGATATGGCCAGAGTCGTATCACCCTCAAGCTGCACACCAAAACTTGAGCAACTACTTTGCGTTTGGAGTGGGTCCTAGTCGCAGGAACTGCTCGAGCGTGAACGAGGAGGAGGTTTCACTGTGCGTGTCTGATGAGTCTACGAGATTTGGATTAACTGTCATGAGGTCTGGAGGCGCAGGAAGCAGCGGCATGAACTGTCAGGACTGTGGTAACCAAGCCAAGAAAGATTGTACACATCTCAGATGCAGGACCTGCTGTAAGACCCGAGGGTTTCAGTGTCAAACTCACGTCAAGAGCACTTGGGTTCCCGCAGCCAAGCGCCGCGAGCGACAACAACAACTCGCTGCGTTGCAGCACCCACAACAATTTCGCGGAGAGAATATTCCTAAACGACATCACAGAGACACACAACTCGTCTCCGCTCCTCAACCCATCACAGGGTTAGAGCTGGGGCAATTCCCACCTGAAGTGAGCACTTCGGCGGTGTTTCGGTGTGTGAGAGTCAGTGCAGTGGACGCTTCAGACGAACAGTGCGCGTATCAAACCTCTGTCAACATCGGAGGGCATGTTTTCAAGGGAATTCTCTACGATCAAGGTCCTGAAAGTTCTTACACCAGTGCAGCAACTGAGGGTTCCTCCGGTGGTGAACACCAACAACTTGGTTTAATAACCGCCGCATCCACAGCCACAACCGGTGGAAACAACCCATTTGACCCTTCACTTTACCCCGCTCCGCTGAATGCTTTCATGTCTGGTACACAATTCTTCCAACCCCCAAGTGTTATTAATAGCGTGGTAAAAAGTGTTATCAAAAGGCTCAGAGAAAAATTTGTGGCACTCGGAAGTGTTCTGAACTAG 1014 0.501 MAGFFSLGGTRRGGPQNKEEEEVEKRDNNNNTNNGNNLLLFRNEEIYNKGFEIWPESYHPQAAHQNLSNYFAFGVGPSRRNCSSVNEEEVSLCVSDESTRFGLTVMRSGGAGSSGMNCQDCGNQAKKDCTHLRCRTCCKTRGFQCQTHVKSTWVPAAKRRERQQQLAALQHPQQFRGENIPKRHHRDTQLVSAPQPITGLELGQFPPEVSTSAVFRCVRVSAVDASDEQCAYQTSVNIGGHVFKGILYDQGPESSYTSAATEGSSGGEHQQLGLITAASTATTGGNNPFDPSLYPAPLNAFMSGTQFFQPPSVINSVVKSVIKRLREKFVALGSVLN 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00322 337 MobiDBLite consensus disorder prediction 1 37 - -
Spst9g00322 337 NCBIfam LRP1 C-terminal domain 204 252 IPR006511 -
Spst9g00322 337 MobiDBLite consensus disorder prediction 14 28 - -
Spst9g00322 337 Pfam Domain of unknown function (DUF702) 115 253 - -
Spst9g00322 337 NCBIfam putative zinc finger domain, LRP1 type 117 159 IPR006510 -
Spst9g00322 337 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 299 IPR007818 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g00322 Spst-Chr9 3056022 3060418 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g00322 1 311 C2H2 Transcription Factor Family AT1G75520 44.932 1.41e-82 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Spst9g00322 DUF702 1.5e-61 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g00322 - - gmx:100818588 441.425