Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00319 ATGGCTCGAGGAAAGATCCAGATCAAGAGGATAGAGAACACCACCAACCGCCAAGTCACTTACTCTAAACGACGCAATGGCCTTTTCAAGAAGGCCAACGAGCTCACCGTTCTCTGCGATGCCAAGGTTTCTATTATTATGTTCTCCAGCACTGGCAAGCTCCACGAGTACATTAGCCCCTCCACCTCAACAAAACAGTTCTTCGATCAATACCAGATGACTCTAGGAGTTGATCTCTGGAACTCTCACTACGAGAATATGCAAGAGAACTTGAAGAAACTCAAGGAGGTCAATAAGAATCTTCGCAAGGAGATAAGGCAGAGGATGGGAGATTGTCTAATCGATCTGAACATGGAAGATCTCAAGCTCCTCGAGGAAGAAATGGACAAGGCTGCCAAGGTTGTTCGTGAGCGTAAGTATAAGGTGATAACAAATCAGATTGACACCCAAAGGAAGAAGTTTAATAACGAGAAAGAAGTGCACAACAGACTCCTGCGTGACTTGGAAGCAAGAGCGGAAGATCCACGCTTTGCATTGATAGACAACGGAGGAGAGTACGAGTCTGTGATCGGATTCTCAAATTTAGGTCCACGCATGTTTGCCTTGAGCCTACAGCCAAGCCATCCTAGTGCTCATAGCGGACCACCCTCTGATCTCACCACTTACCCCCTACTTTTCTAG 681 0.4655 MARGKIQIKRIENTTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMFSSTGKLHEYISPSTSTKQFFDQYQMTLGVDLWNSHYENMQENLKKLKEVNKNLRKEIRQRMGDCLIDLNMEDLKLLEEEMDKAAKVVRERKYKVITNQIDTQRKKFNNEKEVHNRLLRDLEARAEDPRFALIDNGGEYESVIGFSNLGPRMFALSLQPSHPSAHSGPPSDLTTYPLLF 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00319 226 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Spst9g00319 226 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Spst9g00319 226 ProSiteProfiles K-box domain profile. 84 174 IPR002487 GO:0003700|GO:0005634|GO:0006355
Spst9g00319 226 Pfam K-box region 82 168 IPR002487 GO:0003700|GO:0005634|GO:0006355
Spst9g00319 226 SUPERFAMILY SRF-like 3 95 IPR036879 GO:0003677|GO:0046983
Spst9g00319 226 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Spst9g00319 226 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Spst9g00319 226 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Spst9g00319 226 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 163 - -
Spst9g00319 226 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Spst9g00319 226 Coils Coil 151 171 - -
Spst9g00319 226 CDD MADS_MEF2_like 2 80 IPR033896 GO:0000977|GO:0045944
Spst9g00319 226 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Spst9g00319 226 Coils Coil 77 111 - -
Spst9g00319 226 FunFam MADS-box transcription factor 16 13 97 - -
Spst9g00319 226 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g00319 Spst-Chr9 3035998 3039383 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g00319 1 225 MADS-box Gene Family AT3G54340 55.844 3.62e-93 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Spst9g00319 K-box 1e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g00319 K09264 - gmx:547720 404.831
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g00319 9 3035998 3039383 Spst9g00319 9 3035998 3039383 ECH