Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00317 ATGAGGATCCAGTGCGATGTGTGTAACAAAAACCAGGCTTCTTTATTCTGCACCGCCGATGAAGCCGCCCTGTGCGACGCCTGCGACCACCGTGTTCACCACGCCAACAAGCTCGCCTCCAAACACCAACGCTTCTCTCTCACCCACCCCTCTGCTAAGCATTTTCCTATCTGTGATGTTTGCCAGGAGAGAAGAGCTTTTGTGTTTTGTCAGCAAGATAGAGCGATTCTGTGCAAAGAGTGTGACGTGTCTATTCATTCTGCCAACGAACTCACCAAGAACCATACCCGCTTTCTTCTCACTGGGATCAAGTTCTCTGCTTCTGCCACGCCTTATTCTTCATCATCATCATCATCACCATCACCATCACCATCACCCAAGAAAAACCCTGTTCTTGATTCTTCACACGCACCTTCCAATTCTCCTACAACACCCTCACCGCCTAAGCCTGGGGGAAACTCGCCAACAAGTCAAGAACCTGCTTTCACTGGTAGCAGCATATCCGAGTACTTGATAAACACTATCCCTGGCATGAAGTTCGAAGATTTCCTCGATTCACATTCCGTTCCCTTTGCTTGCTCCAAGAATGGTAATGAGATGTTGTCGCTGTTGGGTGAGGGAAACATGGTTTCGTTCTCCCCTGGTGGGATCTGGGTTCCTCAAGCGCCATCTTCTTCTGCTGCATGTTGGGAACAGATGGGTGGGCAGAATGGGTACAGAGAGGGAAGGGAAGGTAGCATTAGATCAGGTTTGGGGGATGATAATTTCATAGTTCCACAGATGAGTCCTCCCAGCAATGTTTCCAAGAGATCCAGGCTTCTATGGTAG 828 0.4915 MRIQCDVCNKNQASLFCTADEAALCDACDHRVHHANKLASKHQRFSLTHPSAKHFPICDVCQERRAFVFCQQDRAILCKECDVSIHSANELTKNHTRFLLTGIKFSASATPYSSSSSSSPSPSPSPKKNPVLDSSHAPSNSPTTPSPPKPGGNSPTSQEPAFTGSSISEYLINTIPGMKFEDFLDSHSVPFACSKNGNEMLSLLGEGNMVSFSPGGIWVPQAPSSSAACWEQMGGQNGYREGREGSIRSGLGDDNFIVPQMSPPSNVSKRSRLLW 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00317 275 SMART bboxneu5 4 47 IPR000315 GO:0008270
Spst9g00317 275 SMART bboxneu5 53 100 IPR000315 GO:0008270
Spst9g00317 275 Pfam B-box zinc finger 56 97 IPR000315 GO:0008270
Spst9g00317 275 Pfam B-box zinc finger 4 44 IPR000315 GO:0008270
Spst9g00317 275 CDD Bbox1_BBX-like 5 47 - -
Spst9g00317 275 Gene3D Classic Zinc Finger 1 95 - -
Spst9g00317 275 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Spst9g00317 275 CDD Bbox1_BBX-like 57 100 - -
Spst9g00317 275 MobiDBLite consensus disorder prediction 111 162 - -
Spst9g00317 275 MobiDBLite consensus disorder prediction 111 140 - -
Spst9g00317 275 MobiDBLite consensus disorder prediction 243 275 - -
Spst9g00317 275 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Spst9g00317 275 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 264 - -
Spst9g00317 275 FunFam B-box zinc finger protein 21 1 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g00317 Spst-Chr9 3012634 3013803 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g00317 1 275 C2C2-CO-like Transcription Factor Family AT1G75540 38.372 2.04e-64 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Spst9g00317 zf-B_box 1.1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g00317 - - gmx:100785978 424.091