Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00312 ATGGCAACAACGGTTATATTCTTCAGCCTCACACTCGTCGCTTTCTTCGCTACCTTAACCACAACCACCACCACTGCCCAAAACACCACTGGGTTAGAGATTCAAGCCTTAATCGCTTTCAAGCGCAGCCTCCATGACCCTCTCGGTTCCCTCGACGGTTGGGACCCTTCTACGCCCTCCGCACCCTGCGACTGGCGCGGCATTCTCTGCCACAACAATCGAGTTCATCACCTCCGTCTTCCCCGTCTCCAACTCGCCGGGCAACTCGCTCCTTCCCTCTCCAATCTCCTTCAACTCCGCAAACTCAGCCTCCATTCCAACAATCTCAACTCCTCCATCCCTTCCTCCCTCTCCCAATGCCTCTTCCTCCGCGCCGTTTACCTCCACAACAACCGCCTCTCCGGCCACCTTCCTCCGCCGCTCCTCAACCTTACCAACCTCCAAATCCTTAACCTCGCCCGCAACCTCTTCACTGGAAAAATCCCTGGCCACCTCTCCTTCTCCCTTCGCTTCCTTGACCTCTCCGACAACGCCTTCTCCGGAGACATTCCGTCCAACTTCTCCTCCAAATCTCAGCTCCAGCTCATCAACCTCTCCTACAACGGCTTCACCGGAGGAATACCTGCCTCCGTCGGAATGCTGCAGAATCTTCAGTATTTATGGTTGGACTCCAACCACATTCACGGAACCCTACCTTCGGCTATTGCAAACTGTACCTCTCTGGTGCACCTCACCGCAGACGATAACGCACTCACCGGACTTTTTCCTCCCACCCTGGGAACCATGCAGAAGCTTCAAGTGCTTTCGATTTCGCGGAACCAGCTTTCCGGTTCGGTCCCCGCCTCCGTGTTTTGCAATGCGCACCTGCGAAGCGTGACGCTCGGGTTCAATTCCTTCACGGGCTTGTCCGCGCCGCAAAGTGGGAAATGCGACAGCGTTTTGGAGGTTTTGGATGTTAAAGAGAATCGCATTGTTCACGCGCGATTTCCCTCGTGGTTGACCCGCGCGACGACGTCGTTGAAGGCTCTTGACCTTTCTGGAAACTTCTTTACCGGTTTTCTGCCGGTTGATATTGGGAACTTTTTAGCGTTGGAAGAGTTCAGAGTGGCGAATAATTTGTTATCCGGTGGAGTTCCGCGTAGCATTGTGAACTGCAGGTTGTTAGAGGTTCTTAATCTTGAGGGAAACCGGTTCTCTGGGTTGATTCCTGGGTTTCTCGGGGAAATGAGAAACCTGAAGGAGTTGTCTCTTGCGGGTAACCTTTTTACCGGTTCGGTTCCTTCTAGTTTTGGAACGCTTTCTGCACTCGAGACGCTTAATTTAAGCGACAATAAGTTAACCGGTGTGGTGCCTAAGGAGATCATGACACTGGGGAACTTGAGTGAATTGAATCTCAGCAATAACAAGTTTTCGGGTCAAGTTTGGTCTAACATTGGGGACATGATGGGTTTGCAGGTTCTTAATTTGAGTCAGTGTGGGTTTTCGGGAAGGGTTCCTGCTTCGTTGGGGAATTTAATGAGACTAACGGTGCTGGATTTGAGCAAGCAGAACCTCTCGGGTGAGTTGCCCCTTGAGGTTTTTGGGTTACCTAGTCTGCAAGTTGTGGCACTTCAAGAGAACCGTTTGAGTGGTAATGTTCCTGAGGGGTTCAGCAGCATAGTTAGTCTGCGATATCTTAATCTCAGCTCTAATGAATACGTGGGTGACATTCCAATAACTTACGGATTCCTTAGTTCTTTAGCGGTTCTCTCACTGTCTCACAATGGTGTTTCTGGTGAAATACCCCCCGAGATTAGTGGTTGTTCGCAGCTCGAAGTATTGCAGTTGCAGTCAAATTTTCTAGAGAGTAACATTCCTGGTGACATCTCTCGGCTCGCTCGTTTAAAGGAGCTTAATTTGGGGCACAATAGATTGAAAGGTGATATCCCAGATGAGATATCAGAGTGTTCTGCTTTGAGTTCACTCTTGTTGGGTGGTAATCACTTCACGGGTCACATTCCAGGTTCCTTGTCAAAACTGTCAAATTTGACCGTGTTGAACCTTTCTTCAAATCATTTGAAAGGGGAAATTCCGGTTGAATTGTCAAGCATTTCTGGTTTGAAGTATTTAAATGTGTCTAGTAATAATCTTGAGGGTCAGATTCCATACGGGCTTGGTGCCAGATTCAATGTCCCTTCCGCGTTTGCAATGAACCAAGGTCTATGCGGGAAGCCCTTGCAAAGAGAATGTGCAAAGGTGAGAAGGAGAAAGAAGAGAAGGCTAATAATGTTGATTGGCGTGGCAGTGGCTGGTTTATGCCTTTTGGCGTTGTGTTGTTGTGGGTATGTTTACAGCCTCTTGAGGTGGCGGAAGAAGCTTAGAGAAGGGGTGACCGGTGAGAAGAAACGGAGCCCTTCAACAAGTGCAGGTAGTAGAGGGAGTGGGGAAAACGGAGGACCAAAGCTAGTGATGTTCAACAACAAGATCACGTACGCGGAGACATTGGAAGCAACGAGAAACTTTGACGAAGAGAACGTCTTAAGCAGGGGAAGATATGGCCTCGTGTTCAAAGCCTCCTTCCAAGATGGAATGGTTCTCTCCATTCGTCGCTTCGTTGATGGGTTCTTAGACGAGGTTAACTTCCGCAAGGAAGCAGAATCACTGGGCAAAGTGAAGCATCGAAACTTAACAGTTCTGCGTGGCTACTATGCAGGCCCACCTGATGTGCGACTTCTTGTGTACGATTACATGCCCAATGGAAACCTTGGTACACTGCTTCAAGAGGCGTCTCAGCAAGATGGCCATGTGCTGAATTGGCCAATGCGTCACCTCATTGCACTAGGAATTGCGCGAGGGCTAGCTTTCTTGCACTCGGTGCCCATAGTTCATGGTGATGTGAAGCCTCAAAATGTTCTTTTTGATGCAGATTTTGAAGCCCATTTGTCTGAATTTGGGTTGGAGCGGTTGACAGTCGCAGTTCCCGCAGAAGCATCCTCGTCGTCCACTCCAGTTGGGTCCTTGGGGTATGTTTCACCAGAAGCTGTATCGAGTGGGGTGGCTACAAAGGAGGGTGATGTTTACAGCTTTGGGATAGTGTTGTTGGAGATACTAACGGGGAAGAAACCGGTGATGTTCACGGAAGATGAGGACATAGTGAAATGGGTGAAAAAGCAGTTACAAAGGGGCCAAATATCGGAGTTGTTGGAGCCAGGGTTGCTTGAGCTAGACCCAGAGTCATCGGAATGGGAAGAGTTCTTGTTGGGTGTGAAAGTGGGTCTCCTGTGCACAGCAACGGATCCTCTTGATCGACCATCTATGTCTGACGTTGCTTTCATGCTCCAAGGTTGCCGGGTCGGACCGGAAATCCCATCATCAGCTGATCCCACAACACTGCCTTCTCCTGCTTGA 3387 0.4963 MATTVIFFSLTLVAFFATLTTTTTTAQNTTGLEIQALIAFKRSLHDPLGSLDGWDPSTPSAPCDWRGILCHNNRVHHLRLPRLQLAGQLAPSLSNLLQLRKLSLHSNNLNSSIPSSLSQCLFLRAVYLHNNRLSGHLPPPLLNLTNLQILNLARNLFTGKIPGHLSFSLRFLDLSDNAFSGDIPSNFSSKSQLQLINLSYNGFTGGIPASVGMLQNLQYLWLDSNHIHGTLPSAIANCTSLVHLTADDNALTGLFPPTLGTMQKLQVLSISRNQLSGSVPASVFCNAHLRSVTLGFNSFTGLSAPQSGKCDSVLEVLDVKENRIVHARFPSWLTRATTSLKALDLSGNFFTGFLPVDIGNFLALEEFRVANNLLSGGVPRSIVNCRLLEVLNLEGNRFSGLIPGFLGEMRNLKELSLAGNLFTGSVPSSFGTLSALETLNLSDNKLTGVVPKEIMTLGNLSELNLSNNKFSGQVWSNIGDMMGLQVLNLSQCGFSGRVPASLGNLMRLTVLDLSKQNLSGELPLEVFGLPSLQVVALQENRLSGNVPEGFSSIVSLRYLNLSSNEYVGDIPITYGFLSSLAVLSLSHNGVSGEIPPEISGCSQLEVLQLQSNFLESNIPGDISRLARLKELNLGHNRLKGDIPDEISECSALSSLLLGGNHFTGHIPGSLSKLSNLTVLNLSSNHLKGEIPVELSSISGLKYLNVSSNNLEGQIPYGLGARFNVPSAFAMNQGLCGKPLQRECAKVRRRKKRRLIMLIGVAVAGLCLLALCCCGYVYSLLRWRKKLREGVTGEKKRSPSTSAGSRGSGENGGPKLVMFNNKITYAETLEATRNFDEENVLSRGRYGLVFKASFQDGMVLSIRRFVDGFLDEVNFRKEAESLGKVKHRNLTVLRGYYAGPPDVRLLVYDYMPNGNLGTLLQEASQQDGHVLNWPMRHLIALGIARGLAFLHSVPIVHGDVKPQNVLFDADFEAHLSEFGLERLTVAVPAEASSSSTPVGSLGYVSPEAVSSGVATKEGDVYSFGIVLLEILTGKKPVMFTEDEDIVKWVKKQLQRGQISELLEPGLLELDPESSEWEEFLLGVKVGLLCTATDPLDRPSMSDVAFMLQGCRVGPEIPSSADPTTLPSPA 1128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00312 1128 PANTHER LEUCINE RICH REPEAT KINASE 2 554 1108 - -
Spst9g00312 1128 FunFam Leucine-rich repeat receptor-like protein kinase TDR 472 745 - -
Spst9g00312 1128 PRINTS Leucine-rich repeat signature 436 449 - -
Spst9g00312 1128 PRINTS Leucine-rich repeat signature 673 686 - -
Spst9g00312 1128 Gene3D Phosphorylase Kinase; domain 1 809 909 - -
Spst9g00312 1128 SMART LRR_typ_2 96 120 IPR003591 -
Spst9g00312 1128 SMART LRR_typ_2 577 601 IPR003591 -
Spst9g00312 1128 SMART LRR_typ_2 144 168 IPR003591 -
Spst9g00312 1128 SMART LRR_typ_2 625 649 IPR003591 -
Spst9g00312 1128 SMART LRR_typ_2 457 481 IPR003591 -
Spst9g00312 1128 SMART LRR_typ_2 262 286 IPR003591 -
Spst9g00312 1128 SMART LRR_typ_2 409 432 IPR003591 -
Spst9g00312 1128 SMART LRR_typ_2 214 238 IPR003591 -
Spst9g00312 1128 SMART LRR_typ_2 529 552 IPR003591 -
Spst9g00312 1128 SMART LRR_typ_2 433 456 IPR003591 -
Spst9g00312 1128 SMART LRR_typ_2 673 697 IPR003591 -
Spst9g00312 1128 FunFam Putative LRR receptor-like serine/threonine-protein kinase 799 909 - -
Spst9g00312 1128 Pfam Leucine Rich Repeat 339 360 IPR001611 GO:0005515
Spst9g00312 1128 Pfam Protein kinase domain 836 1067 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst9g00312 1128 Gene3D Ribonuclease Inhibitor 163 458 IPR032675 -
Spst9g00312 1128 Pfam Leucine rich repeat 410 470 IPR001611 GO:0005515
Spst9g00312 1128 Pfam Leucine rich repeat 651 710 IPR001611 GO:0005515
Spst9g00312 1128 Pfam Leucine rich repeat 579 638 IPR001611 GO:0005515
Spst9g00312 1128 Pfam Leucine rich repeat 507 564 IPR001611 GO:0005515
Spst9g00312 1128 Gene3D Ribonuclease Inhibitor 32 141 IPR032675 -
Spst9g00312 1128 MobiDBLite consensus disorder prediction 791 814 - -
Spst9g00312 1128 FunFam Uncharacterized protein 262 471 - -
Spst9g00312 1128 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 910 1114 - -
Spst9g00312 1128 SUPERFAMILY L domain-like 506 735 - -
Spst9g00312 1128 SUPERFAMILY Protein kinase-like (PK-like) 813 1117 IPR011009 -
Spst9g00312 1128 SMART serkin_6 834 1105 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst9g00312 1128 Gene3D Transferase(Phosphotransferase) domain 1 910 1114 - -
Spst9g00312 1128 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 31 189 - -
Spst9g00312 1128 ProSiteProfiles Leucine-rich repeat profile. 627 649 IPR001611 GO:0005515
Spst9g00312 1128 ProSiteProfiles Protein kinase domain profile. 834 1115 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst9g00312 1128 ProSitePatterns Serine/Threonine protein kinases active-site signature. 954 966 IPR008271 GO:0004672|GO:0006468
Spst9g00312 1128 Pfam Leucine rich repeat N-terminal domain 33 70 IPR013210 -
Spst9g00312 1128 Gene3D Ribonuclease Inhibitor 459 752 IPR032675 -
Spst9g00312 1128 SUPERFAMILY L domain-like 33 354 - -
Spst9g00312 1128 SUPERFAMILY L domain-like 333 580 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g00312 Spst-Chr9 2975472 2978858 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g00312 1 1128 Receptor kinase-like Gene Family AT1G75640 62.785 0.0 1330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-3 Spst9g00312 Pkinase 7.7e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g00312 - - gmx:100801571 1859.73