Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00292 ATGCAGTTGAGTCAAAGATATGAAAGCAATACTTTCAAGTCTCACCCAAGTAATATCGAAGTAGCTGAAATCAGCAAAGCAGTAAATCTTCCCCCTCCAGTTCAAACCGGGCCTACCATAAGAGGAAAGCAAAATGGTAAATCAAAACTTTCAAGAAACACAAAATCTGGGACTCACACACCTAATGCCGATTCCCCTAATTCAACTGTGGTTAACAACTGTCGTTATGACAGTTCCTTAGGACTGTTAACAAAGAAATTTGTGAGCTTGATCCAAGATGCTAAGGATGGCACCCTGGATCTTAATAAAACCGCTGAGATCTTGGAGGTTCAGAAAAGGAGAATTTATGACATTACAAATGTTCTTGAAGGAGTAGGATTGATAGAGAAAACATCAAAGAATCATATACAGTGGAAGGGATGTGGTGGACTTGGGCCACGAGAACTGGAAGACCAAGTTAATTGTCTAAAGGATGAAGTTGAAAGTCTATATGCCAGGGAATGCGAACTTGATGATTGTATAAGGAAAAAGCAGGAGCTTCTTAGAAACCTGGAGGAAAGCGAAAGCTCTCGAAAGTACCTTTTTTTGACCAAGGAAGAGATTCTTTGTCTTCCATGCTTCCAGAATCAAGAAATTATTGCAATCAAGGCTCCAAAAGCTAGTTTCATCGAGGTCCCTGATCCTGATGAGGTGGACGGCTCCAAGTTTGAGGATGATAGTGTCAAACGGGTGAAGTTAATGGATCCATCATGGAATAGTGAGCACTGCAGAAAGAGGGGTGTAGGACTATTAGAAAGCCATGATAAAAAAAATCCTTCTGAGAGTTTCAATCTGCAGGGGTCACAAGCATCTGGAATTCAGGAGATAACTCCCACGGATTTTGAAGCCTTAATTTCTTTAGATAAAGAAAACCTGAAACAGGCTTTTAAATACACATTTATCTCAGTTGCTGGACAAAATGAATGA 966 0.4017 MQLSQRYESNTFKSHPSNIEVAEISKAVNLPPPVQTGPTIRGKQNGKSKLSRNTKSGTHTPNADSPNSTVVNNCRYDSSLGLLTKKFVSLIQDAKDGTLDLNKTAEILEVQKRRIYDITNVLEGVGLIEKTSKNHIQWKGCGGLGPRELEDQVNCLKDEVESLYARECELDDCIRKKQELLRNLEESESSRKYLFLTKEEILCLPCFQNQEIIAIKAPKASFIEVPDPDEVDGSKFEDDSVKRVKLMDPSWNSEHCRKRGVGLLESHDKKNPSESFNLQGSQASGIQEITPTDFEALISLDKENLKQAFKYTFISVAGQNE 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00292 321 PANTHER TRANSCRIPTION FACTOR E2F 40 241 IPR015633 GO:0000978|GO:0006357
Spst9g00292 321 CDD E2F_DD 151 234 IPR032198 GO:0046983
Spst9g00292 321 SUPERFAMILY "Winged helix" DNA-binding domain 75 138 IPR036390 -
Spst9g00292 321 Coils Coil 170 190 - -
Spst9g00292 321 Pfam E2F transcription factor CC-MB domain 156 229 IPR032198 GO:0046983
Spst9g00292 321 MobiDBLite consensus disorder prediction 29 70 - -
Spst9g00292 321 FunFam E2F transcription factor 1 69 142 - -
Spst9g00292 321 Gene3D - 147 250 - -
Spst9g00292 321 Gene3D - 70 143 IPR036388 -
Spst9g00292 321 Pfam E2F/DP family winged-helix DNA-binding domain 77 140 IPR003316 GO:0005667|GO:0006355
Spst9g00292 321 SUPERFAMILY E2F-DP heterodimerization region 151 230 IPR037241 -
Spst9g00292 321 SMART E2F_TDP_2 75 140 IPR003316 GO:0005667|GO:0006355
Spst9g00292 321 MobiDBLite consensus disorder prediction 38 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g00292 Spst-Chr9 2724375 2729606 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g00292 40 231 E2F-DP Transcription Factor Family AT1G47870 60.000 1.19e-75 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Spst9g00292 E2F_CC-MB 5.8e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g00292 K06620 - gmx:100797301 459.529
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g00292 9 2724375 2729606 Spst9g00292 9 2724375 2729606 ECH