Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00278 ATGGTCATTAACATGACAACAACAGAAGAAAGAAGAATAAGTTTCTACCGCTGTCTCATGCGAGTTGAAGAAACAAGAATGAACGTCAAACCCACCGATAGGTTGAGAATTGATGTGACTATTAGTGTTCGATATCAAGATTATTTACATATTATTCAAACATCAACCTTATTAAAAAGGTTAGTATTCATTAGCTGCCAAAGTTTCCTTGAAAATAATAAAGATTTCTTAAGAAGTTTGTTGTTCGACCCAAGTTGCTCTCACTGCTTCATCCCAGAAATTGTTGATCTGGTATCAGAAAGAATTCTCAATATGACTCAACAAATATTGGGATGTTGTCGTGATACTGAATCTGTAGATTCAGAATGCCAAGAATTTTCTTTGAATTTAGACATCATCGTGGATATAGTTCCAGATGTAGAAAGCGAAGAGGAAGAGGAGGAGATTGAAAATGCAGTAACAGAAGAGTCCATGCAGCAAGATGCAGCAATGATTCCGGCGTCTAGTGAAGCCATCCATTCTCTTACAACCTTCACAGATTTTCATTTTTTGAAAAGGATAACCCAGAAATGCAATATTTGTTTGGAAAAATTCCGTCTCGGAGAAGATGAAGAAAAAGTGAAGTTTTCGTGGATGCCATGCGATCATGCATTTCATCATCACTATTTCTTAAGCATTTTGGTGCTCGATCCACCCTACTCAAACTTCTTCGCCCCAGAAAGTATTGATGAAGTATCAGGAACAATTCGTACTCTGGCTGAAGAAATTTTTGAATTTTGTTCTGATACTGAATCATCAGAATACCAAGAGTTTCCCTTGAAGTTAGACATCATCGTGGATTTAGTTCCAGCAGAAGATACAGTTCCAGAAGAAGAGAGCGAGGAGGAAGAGGAGGAGATTGACAATGCAGTAATAGAAGAGTCCATGCAGCAAGATGCAGCAATGATTCCAGCATCCAGTGAAGCCATCCATTCTCTTAAAACCTTCACAATTTTACCTTCTTCGAAAAGGAGGACTGAGGAGTGCAATATTTGTTTGGAACAATTTCGTGTCAGGGAAAACGAAGAAAACGTCAAGTTTTCGTCCATGCCATGTCATCATGTATTTCATCATTACTGTATTGTCAAGTGGCTGCAGATAAGTCACACTTGCCCATTATGTCGTTACCCTATGCCCACTGAGAACTAG 1188 0.3847 MVINMTTTEERRISFYRCLMRVEETRMNVKPTDRLRIDVTISVRYQDYLHIIQTSTLLKRLVFISCQSFLENNKDFLRSLLFDPSCSHCFIPEIVDLVSERILNMTQQILGCCRDTESVDSECQEFSLNLDIIVDIVPDVESEEEEEEIENAVTEESMQQDAAMIPASSEAIHSLTTFTDFHFLKRITQKCNICLEKFRLGEDEEKVKFSWMPCDHAFHHHYFLSILVLDPPYSNFFAPESIDEVSGTIRTLAEEIFEFCSDTESSEYQEFPLKLDIIVDLVPAEDTVPEEESEEEEEEIDNAVIEESMQQDAAMIPASSEAIHSLKTFTILPSSKRRTEECNICLEQFRVRENEENVKFSSMPCHHVFHHYCIVKWLQISHTCPLCRYPMPTEN 395
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00278 395 SUPERFAMILY RING/U-box 190 221 - -
Spst9g00278 395 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 287 392 - -
Spst9g00278 395 SMART ring_2 342 387 IPR001841 -
Spst9g00278 395 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 149 229 IPR013083 -
Spst9g00278 395 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 302 394 IPR013083 -
Spst9g00278 395 ProSiteProfiles Zinc finger RING-type profile. 342 388 IPR001841 -
Spst9g00278 395 CDD RING-H2 191 221 - -
Spst9g00278 395 SMART ringv_2 341 388 IPR011016 GO:0008270
Spst9g00278 395 SUPERFAMILY RING/U-box 323 392 - -
Spst9g00278 395 Pfam Ring finger domain 341 388 IPR001841 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Spst9g00278 Spst-Chr9 2652854 2656442 Dispersed/Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g00278 298 395 C3H Transcription Factor Family AT1G18760 33.673 2.19e-12 64.3
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g00278 - - pvu:PHAVU_005G027800g 191.43