Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00257 ATGTGTGAGAGTGTAGGAGGAGCTTGTGGGTATGGGAATCTATATTCAACAGGGTATGGAACTGATACAGCAGCATTAAGTACTGCTTTATTTAACGATGGAGCTTCATGTGGGGAGTGCTACGAAATCATGTGCGATTATCAAGCAGACCCCAGATGGTGCTTGAAAGGAGCATCTGTGACCATAACTGCCACAAACTTCTGCCCTCCCAATTTTGCTCTGCCCAACAACAATGGTGGGTGGTGCAACCCTCCTCTCAGACACTTTGATATGGCTGAACCCGCATGGGAAAAGATTGGTATCTACAGAGGAGGAATCGTGCCCGTATTGTTCCAAAGGTTTGAGCTTTATTCAATATCTTTGGTTCCATGCATGAAGAAGGGTGGGGTCAGGTTCAGTGTGAATGGGAGAGACTACTTTGAGCTTGTGCTGATCAGCAATGTGGGAGGGGCTGGATCTATCCAAGCTGTGTCCATCAAAGGCTCAAAAACTGGATGGATGACCATGTCAAGAAATTGGGGAGCTAATTGGCAATCCAATGCCTATTTGAATGGTCAATCTTTAACCTTCAGAGTCACAACAACCGATGGAGTTACCAAACTTTTTCAAGATGTGGTTCCACCAAATTGGGCTTTTGGCCAGAGTTTCCCTTCCAGTGTTCAGTTTTAA 669 0.4544 MCESVGGACGYGNLYSTGYGTDTAALSTALFNDGASCGECYEIMCDYQADPRWCLKGASVTITATNFCPPNFALPNNNGGWCNPPLRHFDMAEPAWEKIGIYRGGIVPVLFQRFELYSISLVPCMKKGGVRFSVNGRDYFELVLISNVGGAGSIQAVSIKGSKTGWMTMSRNWGANWQSNAYLNGQSLTFRVTTTDGVTKLFQDVVPPNWAFGQSFPSSVQF 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00257 222 Gene3D - 129 222 IPR036749 -
Spst9g00257 222 SMART dpbb_1 23 111 IPR007112 -
Spst9g00257 222 PRINTS Expansin/Lol pI family signature 5 23 IPR007118 GO:0005576
Spst9g00257 222 PRINTS Expansin/Lol pI family signature 104 120 IPR007118 GO:0005576
Spst9g00257 222 PRINTS Expansin/Lol pI family signature 27 45 IPR007118 GO:0005576
Spst9g00257 222 PRINTS Expansin/Lol pI family signature 204 218 IPR007118 GO:0005576
Spst9g00257 222 PRINTS Expansin/Lol pI family signature 166 180 IPR007118 GO:0005576
Spst9g00257 222 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 139 218 IPR007117 -
Spst9g00257 222 Pfam Lytic transglycolase 23 110 IPR009009 -
Spst9g00257 222 CDD DPBB_EXPA_N 6 124 - -
Spst9g00257 222 SUPERFAMILY Barwin-like endoglucanases 5 147 IPR036908 -
Spst9g00257 222 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 6 113 IPR007112 -
Spst9g00257 222 FunFam Expansin 129 222 - -
Spst9g00257 222 SUPERFAMILY PHL pollen allergen 126 217 IPR036749 -
Spst9g00257 222 Pfam Expansin C-terminal domain 130 207 IPR007117 -
Spst9g00257 222 PRINTS Expansin signature 18 32 IPR002963 GO:0009664
Spst9g00257 222 PRINTS Expansin signature 175 196 IPR002963 GO:0009664
Spst9g00257 222 PRINTS Expansin signature 47 58 IPR002963 GO:0009664
Spst9g00257 222 PRINTS Expansin signature 60 70 IPR002963 GO:0009664
Spst9g00257 222 PRINTS Expansin signature 79 96 IPR002963 GO:0009664
Spst9g00257 222 PRINTS Expansin signature 204 220 IPR002963 GO:0009664
Spst9g00257 222 Gene3D - 1 115 IPR036908 -
Spst9g00257 222 PANTHER EXPANSIN-A15 4 218 IPR002963 GO:0009664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g00257 Spst-Chr9 2378168 2379137 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g00257 23 222 Expansin Gene Family AT1G20190 78.000 8.21e-118 332
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g00257 - - gmx:100527629 423.705
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g00257 9 2378168 2379137 Spst9g00257 9 2378168 2379137 ECH
Spst8g02044 8 28292938 28294107 Spst9g00257 9 2378168 2379137 PCT