Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00253 ATGCTTGATTCGGTTCTGCTCGCGCTTTTCTTGCCCTGCCTTGGCATGAGCGCGGTTTTCGTTGTCTACATGTGCCTTCTTTGGTATGCCACCTCGCGACACCAACCACCCAGCGATGGGCTTCCGGTGAAGCCGGTCATTGACAAGGGTCTCTCCGCTTTGGAGTTGGAGAAGCTTCCGAAAATCACCGGCAAAGAACTGGTCTTGGGCACTGAATGCGCCGTCTGCCTGGACGAGATCGAGGGTGAGCAACCGGCCAGACTGGTTCCCGGTTGCAACCATGGCTTCCATGTCCATTGCGCCGACACCTGGCTCTCCAAGCACCCTCTTTGCCCCGTTTGTAGGTCCAAACTCGACCCCCTGATTTTCATTTCCCATAGCCCCTGCTGA 390 0.5667 MLDSVLLALFLPCLGMSAVFVVYMCLLWYATSRHQPPSDGLPVKPVIDKGLSALELEKLPKITGKELVLGTECAVCLDEIEGEQPARLVPGCNHGFHVHCADTWLSKHPLCPVCRSKLDPLIFISHSPC 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00253 129 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 44 121 IPR013083 -
Spst9g00253 129 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 5 119 - -
Spst9g00253 129 SMART ring_2 73 114 IPR001841 -
Spst9g00253 129 SUPERFAMILY RING/U-box 72 121 - -
Spst9g00253 129 Pfam Ring finger domain 72 115 IPR001841 -
Spst9g00253 129 ProSiteProfiles Zinc finger RING-type profile. 73 115 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g00253 Spst-Chr9 2343387 2343776 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g00253 1 120 C3H Transcription Factor Family AT5G42200 58.871 4.54e-47 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g00253 K19037 - gmx:100776003 247.284
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g00253 9 2343387 2343776 Spst9g00253 9 2343387 2343776 ECH
Spst8g02047 8 28333608 28333994 Spst9g00253 9 2343387 2343776 PCT