Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00233 ATGTCATCGTCGGGAACCCACGGCAGTGAGGACGGAAAACGTTACCCTGCTCCACTCGCCCCTCATGACGATGTCGTCAAGGACTCCACTCTCTTCTGGGACACTCTCAGACGCTTTCATTTCATTATGGGTACCAAATTCATGATTCCTGTGATTGGAGGGAAGGAGCTGGATTTGCACGTTCTTTACGTGGAAGTTACGAGAAGAAGTGGATACGAGAAGGTGATTGCAGAGAAGAAGTGGAGGGAAGTTGGTAGTGTTTTTAAGTTCTCAACTACCACCACAAGTGCTTCTTTTGTATTGAAGAAACATTACTTCAGTCTTCTTTATCATTATGAACAAGTTCACTTTTTTAAAGCTCGGGGTGCTGTCTACACTCCATCAACTGATGCATTTTCCGGGAACAGTCCTTCATGGAGACCTGAATTAGCTATAGTGGAATATTCGCCTAAGCCCTTAAGTAATAGCCCGGAATCCCGTGTTGAAGATACATCATATCTTTCAGGAAATGGAACCATCGAGGGAAAATTTGACTGTGGTTATTTAGTGTCCGTGAAACTGGGGACAGAGGTTCTTAGAGGGGTGCTTTACCATCCAGAAAAAATGGTTGCTCCTTCTTCGGTTCTGCACCATCAGAATGCCATAGTGCCATTCAAAAACAAAGCTCACCGTTCTGGTCGAAGGAGGAGAAACAAAAGAAGGTGGGACCCCAACTATCCGAAGCCGAACAGGAGTGGCTATAACTTCTTCTTTGCTGAAAAACATTACTCTCTCAAGACTCTCTACCCAAACAGAGAAAGAGAGTTTACCAAAATGATTGGCCAGTCATGGAACAGTCTTAGCCCAGAAGAAAGAATGGTTTATCAGAACATCGGGTTAAGAGACAAAGAAAGGTACAAGAGAGAATTGACGGAGTACAAAGAGAAGATGAAGCTTAGGCAGAACCCAGAAGTTGGACTTCCATAG 966 0.442 MSSSGTHGSEDGKRYPAPLAPHDDVVKDSTLFWDTLRRFHFIMGTKFMIPVIGGKELDLHVLYVEVTRRSGYEKVIAEKKWREVGSVFKFSTTTTSASFVLKKHYFSLLYHYEQVHFFKARGAVYTPSTDAFSGNSPSWRPELAIVEYSPKPLSNSPESRVEDTSYLSGNGTIEGKFDCGYLVSVKLGTEVLRGVLYHPEKMVAPSSVLHHQNAIVPFKNKAHRSGRRRRNKRRWDPNYPKPNRSGYNFFFAEKHYSLKTLYPNREREFTKMIGQSWNSLSPEERMVYQNIGLRDKERYKRELTEYKEKMKLRQNPEVGLP 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00233 321 Gene3D - 22 124 IPR036431 GO:0003677
Spst9g00233 321 ProSiteProfiles ARID domain profile. 26 117 IPR001606 GO:0003677
Spst9g00233 321 CDD HMG-box_AtHMGB9-like 240 306 - -
Spst9g00233 321 SUPERFAMILY ARID-like 24 125 IPR036431 GO:0003677
Spst9g00233 321 Pfam HMG (high mobility group) box 240 307 IPR009071 -
Spst9g00233 321 CDD ARID_HMGB9-like 28 113 IPR045303 GO:0003677
Spst9g00233 321 Gene3D High mobility group box domain 224 318 IPR036910 -
Spst9g00233 321 MobiDBLite consensus disorder prediction 221 240 - -
Spst9g00233 321 MobiDBLite consensus disorder prediction 221 235 - -
Spst9g00233 321 Pfam ARID/BRIGHT DNA binding domain 31 113 IPR001606 GO:0003677
Spst9g00233 321 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 240 307 IPR009071 -
Spst9g00233 321 SMART bright_3 27 118 IPR001606 GO:0003677
Spst9g00233 321 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 9 315 - -
Spst9g00233 321 SUPERFAMILY HMG-box 237 310 IPR036910 -
Spst9g00233 321 SMART hmgende2 239 308 IPR009071 -
Spst9g00233 321 SMART ARID_2 23 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g00233 Spst-Chr9 2174909 2176805 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g00233 13 314 ARID Transcription Factor Family AT1G76110 63.987 2.38e-134 383
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Spst9g00233 ARID 3.6e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g00233 - - gmx:100784746 572.007