Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00232 ATGGGAGACACAGAGTCTTGCAACAGCGGAATTTTGAATTCTGGGTGGAATCATCGATGTCCAAAACAGAGACAGAAGGTTGGAGTTTACACCGAGGTTTTGTGCAGACTTAAGGAATTGAATGTCCCAGAGGCTGTGGTTCCTGGTTTTGAGGACGACCTTTGGGCGCACTTCTATCGCCTTCCCGCAAGGCACAACAAATTCTTCCTTCTTCTTACTTTTTACGATTTCGTTCTTCATTTATATGCTTTGGACATGAACATGGAGAGAGCGGAAGAAGTTCTAATGCACAAGAGGTTACTGGACATCGCACGAGCCCCAACTACAGCAACCGGACCTGCAGTTGAAGTCCGTCTTGTGCAGATTACTTTGACTTCCAATGTTTCCTTACGCCTTCACTACGCTATATGTATACGTAGGACGCACTACTTGCTATTGGAATTAGGCAACATTGTTGGCCAAGGAACCAACGTCACGCTTCCTTTTCTACAAACAGTTAGTTCTGCTTCTTCTTCTGCTGCTTCTTCTGCTTCTGCTGGTGGTTCTAGTAAATCCCTTCTTTCAAACTCACAAAGTAAAGTTTGTCCTGAAGATTCTGGTATCCCAGGCAACACAAGGCATGATTATCTTCCATCCTCCACCGGCCTTCGGCCTATGCATGAAATCACAATTTCAACAAATGACAAGCCAAAACTTCTGAGTCAGTTAACTTCCTTACTTTCTGAGACTGGGTTGGACATTCTAGAAGCACATGCTTTTTCGACAATAGATGGCTATTCATTGGATGTTTTTGTTGTTGGTGGTTGGCCAGTTGAGGGGACGGAGAAGTTAAAACATGAACTAGCAAAGAAAATTCAGAAACTCCAGCAACATCAACTGAAAGAAAATGGGAGTCTTACTACTAGTACTACTGCAAAGCAAGTGCAAACTGGGATGAACTTTATCAGGAGAATTGATGCTGGGTGTCTGAGTTACGAAAAGAAAATTGCATCTGGACCTTTCAGTGATTTGTATAAAGGTACGTTCTGCAATCAAGATGTAGCTATCAAGGTTCTTAAGCACGAGAATTTGAATGAAAATATACTAAGGGAGTTTGCTCAGGAAGTGTATATCCTAAGTAAAATTGAGCACAAAAATGTTGTCAAATTTGTTGGCGCTTGTACAAAACCCCCAAACCTTTACCTTGTCACAGAATACATGCCCGGTGGAAGTATGTTCGACTTTTTGCATAAACAGAAGACCACCCTTGCTCTTCCATCTTTACTCAAAGTGGCCATTGATGTTTGCGAAGGAATGAAATATTTGCATCAGAATAATATCATACATCGGGACCTTAAAGCGGCTAATCTTTTGATAGATGAGAATGGGGTGGTTAAGGTTGCCGATTTTGGTGTAGCTAGAATGCACAATCAGTCTGGTATCATGACTGCAGAAACAGGAACTTATCGGTGGATGGCTCCAGAGGTCATTGAACATAAACCATATGATCACAAAGCCGATGTCTTTAGCTTTGCCGTTGTTCTTTGGGAGCTGCTCACAGGAAAGTTCCCCTTGACAGTCACTGCATCCTCAACAGTAGCTGGATTATTTCCTGAAACTGAAGCAGCAATAATCAGAAGTTTCTACAATGAGTCATGTAGGCTTCCTTACGAGAATTTGTCCCCATTGCAAGCAGCAGTAGGAGTGATCCAAAAGGGTTTAAGGCCTAAGATTCCAAGTCATGCTCATCCAAAGTTAGTGGAATTGCTTCACTGGTGCTGGCACCACGATTCATCTTTGAGACCCAATTTCTCAGAAATTCTGGAATTTCTGCTCCGTGTGACCAAGACGGGTCTAATCTGTGGCATAAGAGAGAATCTAATGAACCAAAGAGAGGAAGTTGTGCTTGATTTCCAAGGTAACTATGGCCGCAGCAACAGCAAAGAAGAAAATTTAGCATCAAAAGCTATTGTCAACAGGCCAAGTGACAAGCTTCAGGACTCGCAGGAAAATCCCAAAGGTAGTGAATCAACAAAAAAGAGGAAGCAAGATCAGCATGAAAACCACCACCTCCAAACTTCATATTCAGAAGAAAACGTTGTGCGGTCCACTTCAAACATTTCAACTCCGCGATACTCGTGGAAATCATCAATAAGAAGAACAAAGTCTCGGTTGATAGACCCTCCAGAGGAATCATACACAAATTCAGAGTCGGGTGAACAAAAATTACCAGAAAATTATGAGAGTGTTGAGGACATGCCAGAAATTTACAAGAAAACGAGGCTCAGTGCTTTCTCAATACTTCAGTGGCTATGTCTCGCTTCAATAATCGTAGCCTTGCTTTCTAACCTTTGGATTTCATGCTTACAAAAACTCAAGCTCTGTGGTCTTCCCCTGTGGGAATGGGAGACAATGATTTTAGTTCTAATTTGTGGGCGTTTGCTCGCAGGTTGGATAATCAAACTAATCGTGTTCTTCGTGGAACGCAATTTTATACTAAGAAAACGGGTGCTTTATTTTGTGTACGGTTTGAGAAACTCCGTGAAAAACTGCGTCTGGTTGGGCCTTGTTCTGCTCGTGTGGCATTTTATTTTGGTCAAGGCGGTGGAGAAAAAAGTCAACGACCGGATTTTGTCGTATGTGACAAAGGTTGTGGTGTGTCTGTTCGTCGGCACTGTCATGTGGCTTCTTAAAACGATCCTCGTCAAGGTCTTCGCCTTGCACTTCCACGTGAAAACGTTCTTCGAACGGGTTCGGGAGGCTCTGTTCAGCCAATACGTGATCGAAACGCTGTCGTGTGATCGGTTGAGGGAAGAGGATGGAGGTGAAGATAGATCCGTTGGGAGGGTGTTGTGTAGTAACAAGAAGCAAGATGAGGAAATGTCGATTGAACAATTGCATAGGTTGAATAAGAGAAATATATCTGCGTGGAATATGAAGAGAATGATTAACATCGTCATGCATGGGGCGTTCACTACGTTGGACGAACGTATATCGTGTTCGGATATCGAGGATGAGCCTTTGCTTCAACTTAGAAGCGAATGCCAAGCAAAGATCGCGGCTCAGAAAATTTTTCAAAACGTGGTGCAGCCAGGATCCCAATGTATTTTCTTGCAAGACGTGATGCAGTTTATGCCAAGAGATGAGGCTTTGAAGTCAATGGATCTGTTGGGAGCAGCATGTATAGACCAGGGGATTAGCATGTCTTCTCTTAGAGAGTGGATGGTGCATGCATTCAGGGAGAGAAGGACACTAGCACTATCACTCAAAGACACAAAAACTGCTGTGGATGATCTCCATAATCTGTTGAACATTATTGTTGGTTTTGTCATTTTGATAGTCTGGCTTGTCATACTTGGAACTCCAATCTTACACTTCCTTGTCTTCATGGGATCCCAGCTTCTGTTGGCAGTGTTTGTGTTTGGGAATTCTTGTAGAACTGTTTTTGAAGCAATCATCTTCTTATTTGTAATGCACCCATTTGATGTTGGCGATCTATGTGAAGTAGATGGAGTCCAGATGGTGGTTGAAGAGATGAATATACTCACAACAGTGTTTCTGAAGTACGATAACCAAAAGGTTACATACCCAAACAGTGTTCTAGCTACCAAGCTGATAGGGAATTATCAACGTAGTCCACACATGGGAGATGCAGTGGATTTCTGTATTCATATCTCCACTCCATTGGATAAAGTTGCAACTATGAAAAGAAGAATTATAGAGTATATTGAAAGGAAGAATGAGCACTGGCATGTGGCACCAATGGTGGTGATGAAGGATGTGGAAGAGTTGAACAAAGTGAACATGTCAGTGTGGCTAACGCATAAAATGAATTTTCAGGACATGAAAGAAAGATGGAACAGGAAGGCACAGTTGATTGAAGAGATGATGAAAGTGTGGAAGGAGCTTGATGTTGAATACAGGCTTCTCCCTATTCATGTCAATGTTAGAAATCAACCTCCTCTGCTTTCCAACAAGCTTCCATCCAATTGGGAAACTTGTGCCACCTCTGTGTCTTAG 3999 0.4254 MGDTESCNSGILNSGWNHRCPKQRQKVGVYTEVLCRLKELNVPEAVVPGFEDDLWAHFYRLPARHNKFFLLLTFYDFVLHLYALDMNMERAEEVLMHKRLLDIARAPTTATGPAVEVRLVQITLTSNVSLRLHYAICIRRTHYLLLELGNIVGQGTNVTLPFLQTVSSASSSAASSASAGGSSKSLLSNSQSKVCPEDSGIPGNTRHDYLPSSTGLRPMHEITISTNDKPKLLSQLTSLLSETGLDILEAHAFSTIDGYSLDVFVVGGWPVEGTEKLKHELAKKIQKLQQHQLKENGSLTTSTTAKQVQTGMNFIRRIDAGCLSYEKKIASGPFSDLYKGTFCNQDVAIKVLKHENLNENILREFAQEVYILSKIEHKNVVKFVGACTKPPNLYLVTEYMPGGSMFDFLHKQKTTLALPSLLKVAIDVCEGMKYLHQNNIIHRDLKAANLLIDENGVVKVADFGVARMHNQSGIMTAETGTYRWMAPEVIEHKPYDHKADVFSFAVVLWELLTGKFPLTVTASSTVAGLFPETEAAIIRSFYNESCRLPYENLSPLQAAVGVIQKGLRPKIPSHAHPKLVELLHWCWHHDSSLRPNFSEILEFLLRVTKTGLICGIRENLMNQREEVVLDFQGNYGRSNSKEENLASKAIVNRPSDKLQDSQENPKGSESTKKRKQDQHENHHLQTSYSEENVVRSTSNISTPRYSWKSSIRRTKSRLIDPPEESYTNSESGEQKLPENYESVEDMPEIYKKTRLSAFSILQWLCLASIIVALLSNLWISCLQKLKLCGLPLWEWETMILVLICGRLLAGWIIKLIVFFVERNFILRKRVLYFVYGLRNSVKNCVWLGLVLLVWHFILVKAVEKKVNDRILSYVTKVVVCLFVGTVMWLLKTILVKVFALHFHVKTFFERVREALFSQYVIETLSCDRLREEDGGEDRSVGRVLCSNKKQDEEMSIEQLHRLNKRNISAWNMKRMINIVMHGAFTTLDERISCSDIEDEPLLQLRSECQAKIAAQKIFQNVVQPGSQCIFLQDVMQFMPRDEALKSMDLLGAACIDQGISMSSLREWMVHAFRERRTLALSLKDTKTAVDDLHNLLNIIVGFVILIVWLVILGTPILHFLVFMGSQLLLAVFVFGNSCRTVFEAIIFLFVMHPFDVGDLCEVDGVQMVVEEMNILTTVFLKYDNQKVTYPNSVLATKLIGNYQRSPHMGDAVDFCIHISTPLDKVATMKRRIIEYIERKNEHWHVAPMVVMKDVEELNKVNMSVWLTHKMNFQDMKERWNRKAQLIEEMMKVWKELDVEYRLLPIHVNVRNQPPLLSNKLPSNWETCATSVS 1332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00232 1332 ProSiteProfiles Protein kinase domain profile. 323 604 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst9g00232 1332 Pfam Mechanosensitive ion channel 1094 1298 IPR006685 GO:0016020|GO:0055085
Spst9g00232 1332 MobiDBLite consensus disorder prediction 721 736 - -
Spst9g00232 1332 SUPERFAMILY ACT-like 219 289 IPR045865 -
Spst9g00232 1332 MobiDBLite consensus disorder prediction 718 738 - -
Spst9g00232 1332 MobiDBLite consensus disorder prediction 638 697 - -
Spst9g00232 1332 Coils Coil 271 294 - -
Spst9g00232 1332 CDD STKc_MAP3K-like 329 604 - -
Spst9g00232 1332 Gene3D Phosphorylase Kinase; domain 1 317 400 - -
Spst9g00232 1332 MobiDBLite consensus disorder prediction 179 208 - -
Spst9g00232 1332 Gene3D - 1153 1202 IPR023408 -
Spst9g00232 1332 FunFam Kinase suppressor of Ras 1 314 400 - -
Spst9g00232 1332 SUPERFAMILY Protein kinase-like (PK-like) 305 604 IPR011009 -
Spst9g00232 1332 Gene3D Transferase(Phosphotransferase) domain 1 401 702 - -
Spst9g00232 1332 MobiDBLite consensus disorder prediction 179 198 - -
Spst9g00232 1332 SUPERFAMILY Sm-like ribonucleoproteins 1143 1202 IPR010920 -
Spst9g00232 1332 ProSitePatterns Serine/Threonine protein kinases active-site signature. 440 452 IPR008271 GO:0004672|GO:0006468
Spst9g00232 1332 PRINTS Tyrosine kinase catalytic domain signature 434 452 IPR001245 GO:0004672|GO:0006468
Spst9g00232 1332 PRINTS Tyrosine kinase catalytic domain signature 499 521 IPR001245 GO:0004672|GO:0006468
Spst9g00232 1332 PRINTS Tyrosine kinase catalytic domain signature 480 490 IPR001245 GO:0004672|GO:0006468
Spst9g00232 1332 PRINTS Tyrosine kinase catalytic domain signature 397 410 IPR001245 GO:0004672|GO:0006468
Spst9g00232 1332 ProSiteProfiles ACT domain profile. 221 296 IPR002912 -
Spst9g00232 1332 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 654 1324 IPR016688 -
Spst9g00232 1332 FunFam Predicted mechanosensitive ion channel 1153 1202 - -
Spst9g00232 1332 Pfam Protein tyrosine and serine/threonine kinase 324 604 IPR001245 GO:0004672|GO:0006468
Spst9g00232 1332 MobiDBLite consensus disorder prediction 659 686 - -
Spst9g00232 1332 SMART serkin_6 323 604 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g00232 Spst-Chr9 2160025 2172193 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g00232 732 1330 Mechanosensitive Ion Channel Family AT1G78610 51.406 0.0 642
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Spst9g00232 PK_Tyr_Ser-Thr 3e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g00232 K22048 - vra:106761427 851.277