Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00229 ATGCCTTCAAAACAGAACACCATGGTCTACCTCCACGGGACTCTCGATCTGGTAATCATTGAGGCTCGCTGCCTTCCCAACATGGATTTGCTCTCCGAGCGCGTCCGAAGGTTCTTCTCCGCCCTCAACACCTGCAGCGCCTCCGTCACCGGGAAACGGAACCTATACCGCGCCCGTCACCGCCACCACAAAATCATCACCAGCGATCCTTACGTCACCGTCTGCATCGCTGGCGCCACCGTCGCGCGTACCCGCGTGATCTCCAACTCGCAGAATCCTACCTGGGACGAACACTTCAAGATCCCGCTCGCGCACCCGGCCTCGCAGGTCGAGTTCTTCGTCAAGGATAATGACATGTTTGGCGCAGACCTCATCGGAGTCGTCATCGTCTCCGCCACTAGGATCCTCTCCGGCGAACCCATCAGCGATTGGTTCCCGATTATCGGCTCGTTCGGGAAACCGCCGAAGCCTGACTGCGCCGTGCGTCTCGCGATGAAATTCACGAGGTGCGAGGACAGTCGCATTTTCCGCTCCATCGACGAGCCGGATCCGGACCGGTTCGTGGTTCGGGACTCGTATTTCCCGGTCCGGCACGGAGGGGCGGTGACGCTGTATCAGGACGCGCACGTGCCTGAGGCGATGTTGCCGGAGGTTGAGTTAGACGAGGGTGTGGTGTTTGAGCATGGGAAGTGCTGGGAAGATATATGCCACGCCATTTTGGAAGCGCATCATTTGGTTTACATCGTTGGATGGTCCATCTACCACAAGGTCAAGCTCGTGAGAGAGCCTACCAAGCCCTTACCTAGCGGTGGCAGTTTGAATCTGGGGGAGTTGCTCAAGTACAAGTCCCAAGAAGGTTTGCGAGTTTTACTATTGGTTTGGGATGATAAGACTTCGCACAGCAAGTTTTTCATTAATACGGCTGGAGTAATGCAAACCCATGATGAAGAAACTCGAAAGTTTTTCAAGCATTCTACAGTTAGATGTTTGCTGTCACCAAGATATGCCAGCAGTAAGCTTAGCATTTTCAGGCAGCAGGTTGTCGGAACTCTCTTTACACATCATCAGAAATGTGTGATTGTGGATAGTCAAGCACACGGCAATAATAGGAAGATAACTGCATTTATAGGTGGTCTAGATCTTTGTGATGGCCGGTATGATACACCCGAACACAGAATTTTACGAGATATCGACACTGTTTATCAGGACGATTATCATAATCCCACGTTTTGCGCGGGAACCAAGGGTCCAAGGCAACCGTGGCATGATTTACATTGCAAAATTGAAGGCCCTGCTGCATATGATATACTCACTAATTTTGAGCAGCGCTGGAGAAAGGCCACCAAATGGTCTGAGTTGGGTCGAAAGCTCAAAAGAGTATCTCACTGGCACGATGATTCTTTGATCAAGTTAGAACGCATCTCTTGGATTCTTAGTCCTTCTGAATTAATTTCTAGTGATGATCCTGAACTATGGGTTTCAAAGGAAGACGATCCTAAAAGTTGGCATGTTCAG 1515 0.5089 MPSKQNTMVYLHGTLDLVIIEARCLPNMDLLSERVRRFFSALNTCSASVTGKRNLYRARHRHHKIITSDPYVTVCIAGATVARTRVISNSQNPTWDEHFKIPLAHPASQVEFFVKDNDMFGADLIGVVIVSATRILSGEPISDWFPIIGSFGKPPKPDCAVRLAMKFTRCEDSRIFRSIDEPDPDRFVVRDSYFPVRHGGAVTLYQDAHVPEAMLPEVELDEGVVFEHGKCWEDICHAILEAHHLVYIVGWSIYHKVKLVREPTKPLPSGGSLNLGELLKYKSQEGLRVLLLVWDDKTSHSKFFINTAGVMQTHDEETRKFFKHSTVRCLLSPRYASSKLSIFRQQVVGTLFTHHQKCVIVDSQAHGNNRKITAFIGGLDLCDGRYDTPEHRILRDIDTVYQDDYHNPTFCAGTKGPRQPWHDLHCKIEGPAAYDILTNFEQRWRKATKWSELGRKLKRVSHWHDDSLIKLERISWILSPSELISSDDPELWVSKEDDPKSWHVQ 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00229 505 Pfam Phospholipase D Active site motif 351 385 IPR001736 GO:0003824
Spst9g00229 505 SMART C2_3c 14 144 IPR000008 -
Spst9g00229 505 CDD C2_plant_PLD 8 168 - -
Spst9g00229 505 SUPERFAMILY Phospholipase D/nuclease 178 458 - -
Spst9g00229 505 Gene3D C2 domain 11 175 IPR035892 -
Spst9g00229 505 ProSiteProfiles C2 domain profile. 1 145 IPR000008 -
Spst9g00229 505 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 350 385 IPR001736 GO:0003824
Spst9g00229 505 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 10 152 IPR035892 -
Spst9g00229 505 Pfam C2 domain 13 147 IPR000008 -
Spst9g00229 505 Gene3D Endonuclease Chain A 225 468 - -
Spst9g00229 505 PANTHER PHOSPHOLIPASE D 5 505 IPR015679 -
Spst9g00229 505 FunFam Phospholipase D delta 222 466 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g00229 Spst-Chr9 2099380 2103269 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g00229 8 505 Phospholipase D Gene Family (Wang group) AT4G35790 62.741 0.0 671
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g00229 K01115 - gmx:100795859 959.518