Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00210 ATGGGAGATGATGGTGTGACATCATCATCTGCTACCATGATGGAAGCTCCACCACCTGATGGAACAACAACTTCAATGGATTTTGACTACATGGGTGAGCTTTTCTTAGATGGGTGTTGGTTGGAAGCCTCTGCTGATGGATTTGACTTCTTGCTGGAAAGTCCTTCCTTTTCCTATCCCCTCTTTGACCCTTCATTCTCCTGGCCTGCCTTGGAGACCAACCACAATGAATCCCAGGGTGCTGCTTTTGGAACACAACAAGAAGGCCACAACAACAACATGGTTAATGTTGTTGTTGCTTGTGGTGGAGGTGGTCAGCAGTTTCAGCCTGAAACTATTTCAATTGAAGGTGCATCTGAAGGGGTCAGAAGGTGGTGGTTTGCACCCACACCTAGTCCTGCACCTGGACCTTCTATAATGGAGAAGCTGCTTAGGGCCCTCATGTGGATCAAAGATTACAATAGGAACAAAGATATGCTTATACAGATATGGGTGCCGGTACTTAGAGGGGGTAGGCCGATTCTCGCAGCTAATGATCTTCTGTTCTCACTTGATTCAAGGTCTGTGAACCTTGCAAAGTACCGTGAAATCTCTGTGGGGTATGAGTTTTCTGCTGAGGAGGGTGAGGTCAAGGAGTTGGTGCCAGCAGAGGAGGGTGAGTCCAAGGAGTTGTTGCCAGGATTGCCCGGTAGAGTGTTTAGGGACAAGGTTCCTGAGTGGACTCCTGATGTTAGATTCTTTAGGAGTGATGAGTACCCGCGAGTTGACCATGCTCAAGAGTATGATGTGCGCGGGTCACTAGCAGTTCCAATCTTCGAGCAAGGGAGCAAGATGTGCTTGGGGGTTATTGAGGTTGTGATGACTACTCAGCAGATCAACTATGGTCCTGAACTTGAGAGTGTTTGCAAAGCACTTGAGGCTGTGGATCTTAGAAGCTCCAAACAATTAAGTATTCAGAATGTGAAGGAATGCAACAGGTCCTATGAAGCTGCACTACCTGAGATTCAACAGGTGTTGAGATCTGCATGTGAAATGCACAAATTACCTTTAGCTCAAACTTGGATCCCATGTGTCCAACAAGGCAAAGAGGGGTGTCGACACTCTGAAGATAATTATCTACTTTGTATATCACCTGTGGAGCATGCTTGCTATGTTGGTGATCCCAAAATCAGGTCTTTTCATGAGGCTTGCACTGAGCATCACTTGTTGAAGGGTGAAGGTGTTGCCGGGGGAGCTTTTATGACCAACCAACCATGTTTCTCAGATGACATAACTTCCTTAAGCAAGAAAGACTATCCACTGTCTCATCATGCGAGGTTGTTTGGATTGCGTGCTGCTGTTGCCATCCGCTTGCGAAGCATCTATAGTAGCACCGATGACTTTGTTCTAGAGTTTTTCTTGCCTGTGGATTGCAATGACAGTGAAGAGCAGAGAAAGATGCTTACTTCATTGTCCACCATTATACAAAGGATTTGTCGCAGCTTGCGGGTTATAAGTGATAATGAATTGGAGGAAGCTAAGTTGTCAACTGATAAAGTGATATCCGTTGCAGATAGTGGATTTTCTAGGAGTGCAATTTGCGAGGAACTTCAGCACAAAGGGATAGTTTCCTCGTTGGATACTGAAGAAAAATTAAGTGAAACAATTGGTAGAAAGTTCTCGGATCCAAGGCAGCAACAAGAAAGTCTTATCTTAAAAGGAAACCCTGACTGTGTCAGGGAGTGTTCTACTTCTGTTGAGGGTAACTTATCAAGTGTGGGAATTAGTAAAATGGGAGAGAGAAGACGGGCAAAAGCAGAGAAAACTATCACTTTGCAAGTTCTTCGACAATATTTTGCCGGAAGCCTAAAAGATGCTGCAAAGAATATCGGTGTGTGTACTACAACCCTGAAAAGGATCTGCAGGCAACACGGGATAAAACGTTGGCCATCCCGAAAGATAAAAAAGGTTGGTCACTCCTTACAGAAACTTCAACTTGTCATTGATTCGGTTCAAGGTGCATCTGGCGCATTTCAAATCGATTCCTTCTATTCAAACTTCCCGGACCTAGCTTCTCCAAATTTATCAGGAGCCACCCTGTTCTCAACTTTGAATCAAACAACTGATAATCCAAACAGCATAAGCATACAGCCAGATCCTGGTGCATTGAGTCCAGAAGGCACATCAAAATCACCCTCTTCGTCTTGCACTCAGAGTTCCACTTCAAGCCATTCCTGCTCCAGCATGTCTGAGCTACAGCAGCATCACACAACTAACATTGCCGGTAGCAAAGATCCCACCATGGCTGGTGAAGATTCTGCTGATGTTGTGTTGAAGAGGATCAGGAGCGAAGCAGAGGTTAAAAGCTTGAATCAGGATAAAGGAAAGGTCTTGACAAGATCACTTAGCCAGGAAACACTGGGTGAACACCTAAAAAATCAGTATCAACGACCCTTATTGAAAACAAGTAGCAAGGTGGATGCTCAGAGAGTAAAAGTCACATATGGTGATGAAAAAACCCGGTTTCGGATGCCCAAGAATTGGGGCTATGAAGATCTTCTGCAGGAAATTGCAAGGAGATTTAATGTGAGTGACATGGGCAAATTTGATGTCAAATACTTGGATGATGATTGTGAGTGGGTACTACTCACTTGTGATGCTGATTTAGAGGAGTGCATTGATGTTTGTCAATCTTCTGAGAATGGTACCATCAAACTTAGCCTACAAAATTCTAGTCATAGTATGAGAAGTTCTTTAGAATTTAGATAA 2748 0.4425 MGDDGVTSSSATMMEAPPPDGTTTSMDFDYMGELFLDGCWLEASADGFDFLLESPSFSYPLFDPSFSWPALETNHNESQGAAFGTQQEGHNNNMVNVVVACGGGGQQFQPETISIEGASEGVRRWWFAPTPSPAPGPSIMEKLLRALMWIKDYNRNKDMLIQIWVPVLRGGRPILAANDLLFSLDSRSVNLAKYREISVGYEFSAEEGEVKELVPAEEGESKELLPGLPGRVFRDKVPEWTPDVRFFRSDEYPRVDHAQEYDVRGSLAVPIFEQGSKMCLGVIEVVMTTQQINYGPELESVCKALEAVDLRSSKQLSIQNVKECNRSYEAALPEIQQVLRSACEMHKLPLAQTWIPCVQQGKEGCRHSEDNYLLCISPVEHACYVGDPKIRSFHEACTEHHLLKGEGVAGGAFMTNQPCFSDDITSLSKKDYPLSHHARLFGLRAAVAIRLRSIYSSTDDFVLEFFLPVDCNDSEEQRKMLTSLSTIIQRICRSLRVISDNELEEAKLSTDKVISVADSGFSRSAICEELQHKGIVSSLDTEEKLSETIGRKFSDPRQQQESLILKGNPDCVRECSTSVEGNLSSVGISKMGERRRAKAEKTITLQVLRQYFAGSLKDAAKNIGVCTTTLKRICRQHGIKRWPSRKIKKVGHSLQKLQLVIDSVQGASGAFQIDSFYSNFPDLASPNLSGATLFSTLNQTTDNPNSISIQPDPGALSPEGTSKSPSSSCTQSSTSSHSCSSMSELQQHHTTNIAGSKDPTMAGEDSADVVLKRIRSEAEVKSLNQDKGKVLTRSLSQETLGEHLKNQYQRPLLKTSSKVDAQRVKVTYGDEKTRFRMPKNWGYEDLLQEIARRFNVSDMGKFDVKYLDDDCEWVLLTCDADLEECIDVCQSSENGTIKLSLQNSSHSMRSSLEFR 915
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00210 915 ProSiteProfiles RWP-RK domain profile. 589 670 IPR003035 -
Spst9g00210 915 Pfam PB1 domain 823 903 IPR000270 GO:0005515
Spst9g00210 915 SUPERFAMILY CAD & PB1 domains 820 906 - -
Spst9g00210 915 SMART PB1_new 821 904 IPR000270 GO:0005515
Spst9g00210 915 PANTHER PROTEIN NLP8 114 910 IPR045012 GO:0003700
Spst9g00210 915 MobiDBLite consensus disorder prediction 1 19 - -
Spst9g00210 915 CDD PB1_NLP 823 902 IPR034891 -
Spst9g00210 915 Gene3D - 819 902 - -
Spst9g00210 915 MobiDBLite consensus disorder prediction 702 747 - -
Spst9g00210 915 ProSiteProfiles PB1 domain profile. 821 904 IPR000270 GO:0005515
Spst9g00210 915 Gene3D - 180 307 IPR029016 -
Spst9g00210 915 Pfam RWP-RK domain 602 650 IPR003035 -
Spst9g00210 915 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g00210 Spst-Chr9 1858884 1862745 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g00210 26 906 NLP Transcription Factor Family AT1G20640 47.380 0.0 739
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Spst9g00210 PB1 7.1e-19 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g00210 - - gmx:100785135 1521.14