Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00204 ATGAAAGGAGGCAAGTCGAAAACCGAATCTAAGAGAGCCGATCCCAAACTTGCCGTGAATAAAAAGGGCGCCGCCACCAAGGCTAGGAAACCAGCCGGCAAGGGGAAGGCTGCAAAAGACCCTAACAAGCCAAAGAGGCCTCCCAGTGCTTTCTTTGTTTTCATGGAGGAGTTTAGGAAGCAATTCAACAAGGAACATCCTGACAACAAAGCTGTGTCTGCAGTGGGGAAAGCTGCCGGAGCAAAATGGAAATCGATGACCGATGCTGAAAAAGCACCATATGCTGCAAAGTCTGAGAAACGGAAGGTAGAGTATGAGAAGAGCATGAGAGCCTATAACAAGAAACAGGCGGAAGGTCCTACTGGTGGAGATGAAGAAGAATCTGAGAAGTCAGTATCTGAGGTGAATGATGAGGATGATGATGAGGAGGGCAGTGGCGAGGAGGAGGATGACGATTAG 459 0.488 MKGGKSKTESKRADPKLAVNKKGAATKARKPAGKGKAAKDPNKPKRPPSAFFVFMEEFRKQFNKEHPDNKAVSAVGKAAGAKWKSMTDAEKAPYAAKSEKRKVEYEKSMRAYNKKQAEGPTGGDEEESEKSVSEVNDEDDDEEGSGEEEDDD 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00204 152 SMART hmgende2 43 114 IPR009071 -
Spst9g00204 152 MobiDBLite consensus disorder prediction 93 129 - -
Spst9g00204 152 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 44 113 IPR009071 -
Spst9g00204 152 MobiDBLite consensus disorder prediction 63 152 - -
Spst9g00204 152 MobiDBLite consensus disorder prediction 130 152 - -
Spst9g00204 152 CDD HMG-box_AtHMGB1-like 45 105 - -
Spst9g00204 152 Coils Coil 95 115 - -
Spst9g00204 152 Gene3D High mobility group box domain 27 123 IPR036910 -
Spst9g00204 152 SUPERFAMILY HMG-box 32 118 IPR036910 -
Spst9g00204 152 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 1 148 IPR031061 -
Spst9g00204 152 MobiDBLite consensus disorder prediction 1 18 - -
Spst9g00204 152 MobiDBLite consensus disorder prediction 1 50 - -
Spst9g00204 152 Pfam HMG (high mobility group) box 44 113 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g00204 Spst-Chr9 1789571 1790920 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Spst9g00204 HMG_box 1e-23 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g00204 K25507 - gmx:547975 199.134