Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00202 ATGGAAGCAGAGCACCATCAAGAGACCTCAAATGGTATTGGAAGCCTCTACGTGAAGGTCATGACAGACGAACAAATGGAACTGCTGAGGCAACAGATATCTGTTTACGCCACCATTTGCGAACAGCTTGTTGAAATGCACAGAGCTGTAACTACCCAACAAGACCTCGCAGGGCTGAGGCTGGGTAATTTGTACTGTGATCCGTTGATGGCGTGTTCTGGACACAAGATTACTGCGAGGCAGCGTTGGACTCCAACGCCTCTGCAGCTTCAAATTCTGGAGCGTATTTTTGATGAGGGAAATGGCACTCCAAGTAAGCAGAAGATCAAGGAGATAACCATTGACCTGGGCCAACATGGGCAAATATCAGAGACAAATGTTTATAACTGGTTCCAGAACAGAAGAGCTCGTTCAAAGCGGAAGCAACTCGCTCCCGCATCGAATGTTGTAGAGCCAGAAGCCGAGACAGAAGTTGAATCTCCAAGAGAGAAAAAAATACGTGCTGAAAGCGTTCAGATTATTCAACCCTTTGAGAATTCATCACCTCATAGGATCAAGGATATGTACATCCACAGTCCTGACTTAGGTTTTGAGCAATTGATGAGTAAAATAGAAGTTGCAGGCTGTTACAGCTCTTATTTTCTTTGA 648 0.4506 MEAEHHQETSNGIGSLYVKVMTDEQMELLRQQISVYATICEQLVEMHRAVTTQQDLAGLRLGNLYCDPLMACSGHKITARQRWTPTPLQLQILERIFDEGNGTPSKQKIKEITIDLGQHGQISETNVYNWFQNRRARSKRKQLAPASNVVEPEAETEVESPREKKIRAESVQIIQPFENSSPHRIKDMYIHSPDLGFEQLMSKIEVAGCYSSYFL 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00202 215 CDD homeodomain 80 142 IPR001356 GO:0003677
Spst9g00202 215 MobiDBLite consensus disorder prediction 141 163 - -
Spst9g00202 215 Pfam Homeodomain 80 140 IPR001356 GO:0003677
Spst9g00202 215 SUPERFAMILY Homeodomain-like 79 142 IPR009057 -
Spst9g00202 215 ProSiteProfiles 'Homeobox' domain profile. 76 141 IPR001356 GO:0003677
Spst9g00202 215 PANTHER WUSCHEL-RELATED HOMEOBOX 13 6 198 IPR044559 GO:0003700
Spst9g00202 215 SMART HOX_1 78 145 IPR001356 GO:0003677
Spst9g00202 215 Gene3D - 81 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g00202 Spst-Chr9 1773944 1774880 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g00202 16 213 Wox Gene Family AT4G35550 54.185 5.57e-73 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Spst9g00202 Homeodomain 9e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g00202 - - var:108342525 411.379