Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00199 ATGGCTTCGAGTTGGGATGGAAGTAATGACCCTGGCAGCCAGTCGGATGATAGCTATCATTTTGAGAGGTTGCACATTGAGCCTCTTTATGATGCTTTTGTGTGTCCGCTGACGAAACAAGTTATGCGTGATCCTGTTACTTTAGAAAATGGACAGACTTTTGAACGAGAAGCAATTGAAAAATGGTTCAAGGAGTGTAGGGAGAGTGGACGGAGACTGGTTTGCCCTTTGACTCTTCAGGAGTTAAGAAGCACAGAACTGAATCCAAGTATGGCTTTGAGAAACACCATTGAAGAGTGGACTGCCAGGAATGAAGCTGCGCAGCTGGATATGGCTCGCCGGTCATTGAATATGGGGAGTCCAGAAAATGAAACTCTTCAGGCCTTAAAGTATATCCAGTACATCTGCAAAAGAAGTCGATCAAACAAACACACAGTCCGCAATACAGGGCTTATACCGATTATTGTTGACATGCTGAAGTCTAGCACTCGTAAGGTTCGTTGTAGAGCTCTGGAAACACTTAGAGTCGTGGTAGAGGAAGATGATGAGAATAAGGAATTATTGGCTGAAGGGGATACTGTGCGTACCGTGGTAAAATTCCTTTCGCATGAGCTTTCTAAAGAAAGAGAGGAGGCTGTCTCCTTGCTTTACGAACTCTCAAAGTCTGCTACCCTTTGTGAGAAGATTGGTTCAGTCAATGGAGCCATTCTAATATTAGTAGGGATGACAAGCAGCAAATCAGAAGATCTTCTAACTGTTGAGAAGGCTGATAAAACATTAGAGAATCTGGAGAAGTGTGAGGCTAATGTGCGGCAGATGGCTGAATGTGGTAAATTGCAGCCTCTTCTGACCCAGCTTCTTGAAGGTCCACCAGAAACCAAACTCTCCATGGCTGCATACCTTGGTGAGCTGGTTTTAAACAATGATGTTAAAGTTCTTGTTGCTGGAACTGTGGGTTCATCTCTGATCAATATAATGAAAAGTGGTAATATGCAATCAAGAGAAGCAGCACTGAGGGCACTAAATCAGATATCATCATGTGAACCAAGTGCAAAGATATTAATAGAGGCTGGAATACTTTCTCCTCTTGTTAATGACCTTTTTGCAGTGGGTCCTAATCTGCTTCCTACACGATTGAAGGAGATCTCTGCTACAATTCTTGCCAGTGTCGTAAACTCGGGAGAAGACTTCTATTCCATTCCATTTGGACCTGATCACCAAACCCTGGTCTCAGAGGATATAGTTCGTAATCTCCTCCATCTTATAAGTAACACTGGTCCAGCCATAGAGTGCAAACTTCTACAAGTTCTTGTTGGACTTACTACTTCTCCAACTACAGTTCTGAGCGTTGTGTCTGCTATTAAAAGTTCTGGTGCCACCATCAGTCTAGTTCAGTTCATTGAAGCGCCACAGAAGGATCTGCGTGTAGCTTCCATAAAACTTCTTCAGAATTTGTCTCCTCATATGGGTCAGGAACTAGCTCATGCACTACGTGGCTCAGTTGGACAGCTTGGAAGTCTAATTAAAGTGATATCAGAAAATACAGGGATCACTGAAGAGCAGGCTGCAGCGGTTGGCCTCTTAGCCGATCTACCTGAATGGGACTTGGGCCTCACGAGACAGCTACTAGACGAAGGTGCCTTTGTGATGGTCATATCCAGGGTGCTTGCCATCAGGCAGGGAGAGATCAGAGGCAATCGCTTCATGACACCATTTCTTGAAGGGCTTGTAAAGATTGTTGCAAGGGTTACATATGTCTTGGCTGAAGAGCCTGATGCCATTGCACTCTGCCGTGATCACAATCTTGCTGCACTCTTTATTGACCTGCTTCAGTCCAATGGACTTGATAATGTGCAGATGGTTTCTGCCACAGCTCTGGAGAATCTATCCCGAGAGTCAAAAAACTTAACCAGATTACCGGAGGTGCCATTGCCGGGCTTTTGTGCTTCAGTCTTTTCATGCTTCAGCAAGCAGCCGGTGATAAGTGGATTGTGTAGGCTCCACAGGGGGATATGTTCTTTGAAAGAAACATTTTGTCTGTACGAAGGGCAGGCAGTGCTTAAGTTAGTAGGTCTACTGGACCACACAAATGTGAATGTGGTTGAGGCAGCACTGGCAGCTTTGTCCACTTTAATAGATGATGGAGTAGATATTGAGCAAGGGGTGGCGATTTTGTGTGAAGCAGAGGGAGTGAAGCCAATACTTGATGTGCTGCTTGAGAAAAGAACAGAAACATTGAGGAGGAGAGCAGTTTGGGCAGTGGAGAGACTATTGAGAACAGATGACATAGCCTGTGAAGTTTCTTCAGACCAAAACTTGAGCACTGCACTTGTGGATGCTTTCCAGCATGGTGACTATCGAACTAGGCAGACAGCTGAGCGTGCTCTCAAGCATGTTGATAAGATACCAAACTTCTCAGGAATCTTTCCAAACGTAGCATGA 2442 0.4476 MASSWDGSNDPGSQSDDSYHFERLHIEPLYDAFVCPLTKQVMRDPVTLENGQTFEREAIEKWFKECRESGRRLVCPLTLQELRSTELNPSMALRNTIEEWTARNEAAQLDMARRSLNMGSPENETLQALKYIQYICKRSRSNKHTVRNTGLIPIIVDMLKSSTRKVRCRALETLRVVVEEDDENKELLAEGDTVRTVVKFLSHELSKEREEAVSLLYELSKSATLCEKIGSVNGAILILVGMTSSKSEDLLTVEKADKTLENLEKCEANVRQMAECGKLQPLLTQLLEGPPETKLSMAAYLGELVLNNDVKVLVAGTVGSSLINIMKSGNMQSREAALRALNQISSCEPSAKILIEAGILSPLVNDLFAVGPNLLPTRLKEISATILASVVNSGEDFYSIPFGPDHQTLVSEDIVRNLLHLISNTGPAIECKLLQVLVGLTTSPTTVLSVVSAIKSSGATISLVQFIEAPQKDLRVASIKLLQNLSPHMGQELAHALRGSVGQLGSLIKVISENTGITEEQAAAVGLLADLPEWDLGLTRQLLDEGAFVMVISRVLAIRQGEIRGNRFMTPFLEGLVKIVARVTYVLAEEPDAIALCRDHNLAALFIDLLQSNGLDNVQMVSATALENLSRESKNLTRLPEVPLPGFCASVFSCFSKQPVISGLCRLHRGICSLKETFCLYEGQAVLKLVGLLDHTNVNVVEAALAALSTLIDDGVDIEQGVAILCEAEGVKPILDVLLEKRTETLRRRAVWAVERLLRTDDIACEVSSDQNLSTALVDAFQHGDYRTRQTAERALKHVDKIPNFSGIFPNVA 813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00199 813 Gene3D - 316 486 IPR011989 -
Spst9g00199 813 CDD RING-Ubox_PUB 30 87 IPR045210 -
Spst9g00199 813 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 30 109 IPR013083 -
Spst9g00199 813 Pfam U-box domain 31 105 IPR003613 GO:0004842|GO:0016567
Spst9g00199 813 SUPERFAMILY RING/U-box 23 110 - -
Spst9g00199 813 ProSiteProfiles U-box domain profile. 28 107 IPR003613 GO:0004842|GO:0016567
Spst9g00199 813 SUPERFAMILY ARM repeat 461 799 IPR016024 -
Spst9g00199 813 Gene3D - 116 315 IPR011989 -
Spst9g00199 813 SUPERFAMILY ARM repeat 120 545 IPR016024 -
Spst9g00199 813 Gene3D - 573 803 IPR011989 -
Spst9g00199 813 SMART Ubox_2 32 100 IPR003613 GO:0004842|GO:0016567
Spst9g00199 813 SMART arm_5 672 713 IPR000225 GO:0005515
Spst9g00199 813 SMART arm_5 307 346 IPR000225 GO:0005515
Spst9g00199 813 SMART arm_5 181 221 IPR000225 GO:0005515
Spst9g00199 813 SMART arm_5 347 392 IPR000225 GO:0005515
Spst9g00199 813 SMART arm_5 139 179 IPR000225 GO:0005515
Spst9g00199 813 SMART arm_5 266 306 IPR000225 GO:0005515
Spst9g00199 813 SMART arm_5 590 631 IPR000225 GO:0005515
Spst9g00199 813 SMART arm_5 717 759 IPR000225 GO:0005515
Spst9g00199 813 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 21 809 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g00199 Spst-Chr9 1755100 1759169 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g00199 2 813 U-box Gene Family AT1G76390 64.988 0.0 1034
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g00199 - - gmx:100789746 1478