Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00193 ATGAATTCGTTTTGGCTAGTTTATTGGGTGGTGTGGTGTTTGGGAGTATCATCATCGGTGTTGTCTCCGTTTGTGGGGGCTGCAAATGTGTCATCCTCGAGACCTGCTGTTGTCAACATTGGGGCAATCTTCAACATCGATTCCGTTCTTGGCAAAGTGGCTAAAATTACGTTGGAGGAAGCCGTGAAAGATGTAAACGCCGACACTAACATTCTACATGGAACTAAACTTGTTCTTACTATGCAAAATTCCAATTACAGCGGTTTCATAGGCATGGTTCAAGCTTTGCGGTTCATGGAGACTGATGTGGCTGCTATAATAGGACCACAATCTTCTGTGGTTGCCCACATAATATCCCATGTTGCAAATGAACTACGGGTTCCTTTATTATCATTTGCCGCAACAGACCCTACCCTCACATCGCTGCAGTTTCCTTTCTTTGTGAGGACAACACAGAGTGATTTGTACCAAATGAAGGCTGTTGCTGAAATCATTGATTACTATGGTTGGAAGGAGGTGATTGCCATATATGTGGATGATGATTATGGACGGAATGGTGTGGCTGCTTTGGATGATGAACTAGCTGCTAGGCGCTGTAGAATCTCCTTCAAGGAAGGGATCAATTCCGGAACTGAAGTTAACCGGGGAGAAATTACGAGTTTGCTTGTGAAAGTGGCACTGATGCAGTCTCGGATCATTGTTCTCCATGCACAAACTGATTATGGTTTTATGGTTTTCAACGTGGCACGTTATCTTGGGATGACAGACAATGGCTATGTGTGGATAGTCACGGACTGGCTGTCTTCACTTTTGGATTCTGCTTCTCTCCCTTCAGAGACAACGGATGTTCTACAGGGAGTACTTGTTCTGCGCCAGCATACACCTGATTCGGATAGAAAAAGGGCATTTGCCGCTAGGTGGAACAAGTTGACTGGTGGGTCTTTGGGATTACATTCTTATGGCCTCTATGCTTATGATTCTGTTTGGCTTGTTGCACGGGCTCTTGATGCTTTTTTCAGTCAGGGTGGGGTTGTTTCGTGTACCAATTACACAACCATTGGTGGTGGTGATAAGGGAGGCGATTTAAACCTTGATGCGATGAGCATTTTTGACAATGGAACGCTTCTGCTGAATAACATATTGCAGAGTAATTTTGTTGGATTATCTGGTCAAATGAAATTTGAGCCAGATCGGTCTCTCGTTCATCCTGCCTATGACGTCCTTAATGTGGTTGGAACTGGCCTTAGGAGGATTGGTTACTGGTCCAACTATTCAGGTTTGTCAATCGTATCTCCTGAGATATTGTATGCAAAACCACCTAATAGATCAAGTGCGAACCAGAAGCTTTACAGTGTGATATGGCCTGGAGAAACAGTATCTAAACCCCGTGGATGGGTCTTCCCAAATAATGGTAGACAGTTGAGAATTGGTGTGCCTATCCGAGTCAGTTACCGTGAATTTGTCTCACCAGTGCAGGGAACTGAGACGTTTAAAGCAGCTCTGAACTTGTTGCCTTATGCTGTTCCTTACCATTTTGTCCCATTTGGAGACGGACACAAAAATCCAAGCTACACAGAACTTGTCAACCTAATCAGAACTGGTTACTTTGATGGTGCCATCGGTGACATTGCTATTGTCACAAATCGGACAAGGATTGTAGATTTTACGCAGCCATATGCAGCATCGGGACTTGTTGTGGTGGCCCCGTTCACAAAAATTAATTCTGGTGGTTGGGCTTTCCTGCAGCCATTTACTCCCCTTATGTGGATTGTGACTGCTAGTTTCTTCCTTTTCATTGGGATAGTTATATGGATTCTGGAACACAGGATAAATGATGAGTTTAGGGGTCCACCTAGGCAGCAAGTTATAACCTTGTTATGGTTTAGCCTGTCAACACTGTTTTTTTCCCACAGAGAGAATACCATGAGTGCTCTTGGTCGGTTTGTGATGCTCATATGGCTATTTGTGGTTTTGATCCTCACTTCCAGCTACACTGCAAGTTTAACATCCATACTCACAGTGCAGCAGTTATCTTCTCCTATCAGTGGAATAGATAGCTTAAAGGCTAGTGATGACCCTATAGGATTCCAAGTGGGTTCATTTGCAGAACATTACTTGATTCAAGATATTGGAATATCCAAATCTAGGCTTTTTGCCCTTGGATCTCCAGAAGAATATGCTAAGGCCCTTCAGCTTGGTCCTAAAAGAGGAGGTGTTGCTGCCATTGTTGATGAACGACCTTATGTTGAAATCTTCTTATCAAGCCAGTGCACATTCAGAATTGTCGGTCAGGAGTTCACCAGAAGTGGATGGGGTTTTGCATTCCCCCGGGACTCCCCCTTGGCAGTGGATATGTCAACAGCCATTCTACAACTTTCTGAAACGGGTGATCTACAGAGGATTCATGATAAGTGGATGACACGAAGCTCTTGTAGTTTAGACAATGCTGAAATTGACTCAGATCGTCTTCAGCTTAAAAGTTTCTGGGGTCTCTTTCTCATTTGCGGGATAGCTTGTTTTGTTGCTCTTCTTTTGCATTTTTTGCAGCTTATGTTCCAGTTACGGAAATCTCTACCTTCTGAACCTGCTTCTAGTGCTTGCTCAATTTCTGGCCCTTTTCAAAGATTTCTTTCACTGATTGACGAGAGAGAAGATCCATCGAGGAGTAAAGGAAGAAAGAGAAATGGAGACGAAAGATCACTTGAAGATCAACTGGGAAGGCAGTCGAAGAGGGTACAACTACGAACAGAAATAACGCCCTAA 2763 0.4376 MNSFWLVYWVVWCLGVSSSVLSPFVGAANVSSSRPAVVNIGAIFNIDSVLGKVAKITLEEAVKDVNADTNILHGTKLVLTMQNSNYSGFIGMVQALRFMETDVAAIIGPQSSVVAHIISHVANELRVPLLSFAATDPTLTSLQFPFFVRTTQSDLYQMKAVAEIIDYYGWKEVIAIYVDDDYGRNGVAALDDELAARRCRISFKEGINSGTEVNRGEITSLLVKVALMQSRIIVLHAQTDYGFMVFNVARYLGMTDNGYVWIVTDWLSSLLDSASLPSETTDVLQGVLVLRQHTPDSDRKRAFAARWNKLTGGSLGLHSYGLYAYDSVWLVARALDAFFSQGGVVSCTNYTTIGGGDKGGDLNLDAMSIFDNGTLLLNNILQSNFVGLSGQMKFEPDRSLVHPAYDVLNVVGTGLRRIGYWSNYSGLSIVSPEILYAKPPNRSSANQKLYSVIWPGETVSKPRGWVFPNNGRQLRIGVPIRVSYREFVSPVQGTETFKAALNLLPYAVPYHFVPFGDGHKNPSYTELVNLIRTGYFDGAIGDIAIVTNRTRIVDFTQPYAASGLVVVAPFTKINSGGWAFLQPFTPLMWIVTASFFLFIGIVIWILEHRINDEFRGPPRQQVITLLWFSLSTLFFSHRENTMSALGRFVMLIWLFVVLILTSSYTASLTSILTVQQLSSPISGIDSLKASDDPIGFQVGSFAEHYLIQDIGISKSRLFALGSPEEYAKALQLGPKRGGVAAIVDERPYVEIFLSSQCTFRIVGQEFTRSGWGFAFPRDSPLAVDMSTAILQLSETGDLQRIHDKWMTRSSCSLDNAEIDSDRLQLKSFWGLFLICGIACFVALLLHFLQLMFQLRKSLPSEPASSACSISGPFQRFLSLIDEREDPSRSKGRKRNGDERSLEDQLGRQSKRVQLRTEITP 920
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00193 920 FunFam Glutamate receptor 703 810 - -
Spst9g00193 920 CDD GluR_Plant 472 805 - -
Spst9g00193 920 SUPERFAMILY Periplasmic binding protein-like I 32 466 IPR028082 -
Spst9g00193 920 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 38 854 IPR015683 -
Spst9g00193 920 Gene3D - 577 703 - -
Spst9g00193 920 FunFam Glutamate receptor 577 707 - -
Spst9g00193 920 FunFam Glutamate receptor 153 306 - -
Spst9g00193 920 SMART GluR_14 475 808 IPR001320 GO:0015276|GO:0016020
Spst9g00193 920 SUPERFAMILY Periplasmic binding protein-like II 450 808 - -
Spst9g00193 920 Gene3D - 772 805 - -
Spst9g00193 920 Pfam Bacterial extracellular solute-binding proteins, family 3 523 807 IPR001638 -
Spst9g00193 920 FunFam Glutamate receptor 469 576 - -
Spst9g00193 920 Gene3D - 469 576 - -
Spst9g00193 920 Gene3D - 57 402 - -
Spst9g00193 920 Pfam Receptor family ligand binding region 59 412 IPR001828 -
Spst9g00193 920 CDD PBP1_GABAb_receptor_plant 39 430 IPR044440 -
Spst9g00193 920 Gene3D - 738 771 - -
Spst9g00193 920 PRINTS Metabotropic glutamate GPCR signature 157 173 IPR000337 GO:0004930|GO:0007186|GO:0016020
Spst9g00193 920 PRINTS Metabotropic glutamate GPCR signature 173 190 IPR000337 GO:0004930|GO:0007186|GO:0016020
Spst9g00193 920 PRINTS Metabotropic glutamate GPCR signature 138 157 IPR000337 GO:0004930|GO:0007186|GO:0016020
Spst9g00193 920 PRINTS Metabotropic glutamate GPCR signature 106 132 IPR000337 GO:0004930|GO:0007186|GO:0016020
Spst9g00193 920 MobiDBLite consensus disorder prediction 882 920 - -
Spst9g00193 920 MobiDBLite consensus disorder prediction 882 910 - -
Spst9g00193 920 Pfam Ligand-gated ion channel 808 839 IPR001320 GO:0015276|GO:0016020
Spst9g00193 920 PIRSF IGluLR_plant 5 918 IPR017103 -
Spst9g00193 920 Gene3D - 153 427 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g00193 Spst-Chr9 1684188 1690426 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g00193 32 911 Ion Channels AT1G42540 63.960 0.0 1217
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g00193 K05387 - gmx:102661260 1625.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g00193 9 1684188 1690426 Spst9g00193 9 1684188 1690426 ECH