Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00182 ATGACTCGTCCCTTCAGATATTTAGGCGAGAGCAACTCGTCCAACGACTCACCAGTTGTCGACTCCGACTTCGTCGTCATCCTCGCCGCTCTCCTCTGCGCTCTCATCTGCGTCCTCGGCCTCGTCGCCGTAGCGCGCTGTGGCTGTCTGCGCCGCCTCCGCCTCTCCTCCACCCCCACTCCCCAGCCTACTCTCGCCGCTGCCAACAAAGGCGTCAAGAAGAAGGTCCTCCGCTCCCTCCCCAAGCTCACCGCCACCGCCGAATCTGCCGTCAAATTCGCCGATTGTGCGATCTGCCTCTCGGAGTTCGCCGCCGGAGACGAAATCCGAGTGCTGCCTCAGTGCGGACATGGATTCCACGTCAGCTGCATCGACGCCTGGCTCAGATCGCACTCCTCCTGTCCCTCGTGCCGTCAGATTCTGGTGGTTTCTCGCTGCGACAAGTGCGGCGGGATCCCGACTCCGGCGAGCTCCAGCTCTGCGCCTCCGCCTCCGGAATCCGAGGCCAGAATCAAGGTAAGGGAGGACAACGGCAATAGGTTCTTGCCTTAG 552 0.6232 MTRPFRYLGESNSSNDSPVVDSDFVVILAALLCALICVLGLVAVARCGCLRRLRLSSTPTPQPTLAAANKGVKKKVLRSLPKLTATAESAVKFADCAICLSEFAAGDEIRVLPQCGHGFHVSCIDAWLRSHSSCPSCRQILVVSRCDKCGGIPTPASSSSAPPPPESEARIKVREDNGNRFLP 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00182 183 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 61 142 IPR013083 -
Spst9g00182 183 ProSiteProfiles Zinc finger RING-type profile. 96 138 IPR001841 -
Spst9g00182 183 MobiDBLite consensus disorder prediction 168 183 - -
Spst9g00182 183 MobiDBLite consensus disorder prediction 153 183 - -
Spst9g00182 183 SMART ring_2 96 137 IPR001841 -
Spst9g00182 183 CDD RING-H2_EL5-like 95 138 - -
Spst9g00182 183 Pfam Ring finger domain 95 138 IPR001841 -
Spst9g00182 183 SUPERFAMILY RING/U-box 78 144 - -
Spst9g00182 183 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 14 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g00182 Spst-Chr9 1631760 1632311 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g00182 5 183 C3H Transcription Factor Family AT1G20823 64.249 4.44e-70 209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g00182 - - pvu:PHAVU_009G007400g 298.516
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g00182 9 1631760 1632311 Spst9g00182 9 1631760 1632311 ECH