Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00177 ATGCTGGCAATGGAGGAGCTGTTGTGTGAGCTCAGAGATCATGAAAAGAATAACGAGCAAGGCCTGCCACCGGGTTTTAGGTTTCACCCCACTGATGAAGAACTTGTTACCTTTTACTTGGCTTCAAAGGTGTTTAATGGGAGCTTCACTAGTGTCAAGTTCGCTGAGGTTGACCTCAATAGATGTGAGCCTTGGGAACTTCCAGATGTGGCAAAGATGGGGGAGAGAGAGTGGTATCTGTTCAGCTTGAGGGACAGAAAATACCCAACTGGACTTAGAACAAACAGGGCCACCGGAGCTGGATACTGGAAAGCCACTGGGAAGGACAAGGAAGTGTTCAGTGCATCAAGTGGCACCCTACTTGGAATGAAGAAGACCCTTGTTTTCTACAAAGGTAGGGCCCCTCGTGGAGAAAAGACCAAATGGGTCATGCACGAGTACCGTTTGGACGGTGACTTTTCCCTTCCCCACCCTCACCCTCACCCTCATCCTCATCACATCTCCAAGGAGGAGTGGGTGATATGCAGGATATTTCATAAATCCGGGGAAAAGAAGACTCCACTGCTCCAAGTCCAAGGACATTCAGATGTTTCTTCCTCCCCAGCAAAAAATTCTTTACCTCCTCCTTTGCTTGCAAGCCCAACTTCCTTCGCATTGGAACTAGAATGTCAATCCCAAAGCCCGGTTCTCATTCACCACCACCAAGACCAAAATCACCTCTCTCACTCTCACCCTTATCTTTTCCCAGTGCATGCATCGCCAGAACTCACCAACGACCATCATCCATCATTTTCTGACCTATTCTTCAAGCCCCTCCACCTCTCACAACAAAACTGCATTCTCAAGGCCAAGGAAAAAACCGTTCCAAAAGTAATCAAATCGGAGGAGGCTGCAGCATTCTATCAGTACCCATTACAAGATGACGCTAGTAACTTGCGGTGGGTGAACAAGTTGAACCAAAATCAAAGTAATTTCCAAAACCCTTTTCCTGATGTTGAGGTGGATGCTGGGCTGATGGGATTCTCAGGAGGTGCAAATGCTGAAGCTAAGGACATGTCAAATTCAACAGCCTTTAATAGGGTAGGGTTGCAGCAGGTGATAGATGCTGCTCATATCGGAATCGATTCTTGGCATCTGGCCCAGCATGTTTAA 1152 0.474 MLAMEELLCELRDHEKNNEQGLPPGFRFHPTDEELVTFYLASKVFNGSFTSVKFAEVDLNRCEPWELPDVAKMGEREWYLFSLRDRKYPTGLRTNRATGAGYWKATGKDKEVFSASSGTLLGMKKTLVFYKGRAPRGEKTKWVMHEYRLDGDFSLPHPHPHPHPHHISKEEWVICRIFHKSGEKKTPLLQVQGHSDVSSSPAKNSLPPPLLASPTSFALELECQSQSPVLIHHHQDQNHLSHSHPYLFPVHASPELTNDHHPSFSDLFFKPLHLSQQNCILKAKEKTVPKVIKSEEAAAFYQYPLQDDASNLRWVNKLNQNQSNFQNPFPDVEVDAGLMGFSGGANAEAKDMSNSTAFNRVGLQQVIDAAHIGIDSWHLAQHV 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00177 383 Gene3D NAC domain 31 185 IPR036093 GO:0003677|GO:0006355
Spst9g00177 383 ProSiteProfiles NAC domain profile. 22 180 IPR003441 GO:0003677|GO:0006355
Spst9g00177 383 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 19 258 - -
Spst9g00177 383 SUPERFAMILY NAC domain 18 180 IPR036093 GO:0003677|GO:0006355
Spst9g00177 383 FunFam NAC domain-containing protein 100-like 31 184 - -
Spst9g00177 383 Pfam No apical meristem (NAM) protein 23 149 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g00177 Spst-Chr9 1573004 1575323 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g00177 1 186 NAC Transcription Factor Family AT1G76420 71.505 9.13e-95 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Spst9g00177 NAM 6.4e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g00177 - - gmx:100780313 509.22