Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00174 ATGAGCATGTCGGGATCTGACATGGCAACCAGGGAGCAATTCACGGTTGGGATGCACAGTCCTCAGCCCCAACCGCAACACCAACAGCCTCAACTTCATCAAAACATGCGTTTGGACTATGGTGCTGCTGATGGCGCCGATATTTTCGCCGCCCCTACCATCAACATTAACGGCGGAGAATCCTCTCCAGTGGGTGTGCCTCCGGGACTGGGCCTGGGCCAGGCCCATCCCCAGGCTATGGTGGGGAACTCCACTGAGCAACTCAAGAGAAAGAGGGGAAGGCCCAGGAAATACGGGCCTGACAGCGGCATGGCCTTGAGCTTGAATACTACCCCTACTCCCGGCGGATCCACCGTGCCGGTTGGCCAGTCCGGTGGGGCATTTCCGGCGAATCCTCTCTCTGATTCTGCCTCAGCCGGTACCGGGAAGCGTAGGGGCAGACCTCGCGGTTCTGTTAACAAGATTAAGAAAAGCTCAAAGTTTTCCGGACTAGGAACTTTCTTTGCTCCGCATGTCATTACCGTGAAAGCTGGAGAGGATTTGTCTGCAAGAATTATGTCAATTTCCCAGAGCGGTTCAAGAAATGTTTGCATCTTAAGTGCAAATGGATCCATATCTAATGTGACACTTCGACAACCTGCCTCATCTGGTGGAACTGTGACTTATGAGGGGCGATTTGAGATCTTATCACTTGGTGGTTCTTTGTTTCTCCCTGAAAATGGTTCTCAGAGCGAAAGGGCCGGGGGCCTGAGTGTGTCCTTGTCAGGGCCAGATGGCCGTGTCTTGGGTGGCGGAGTCGCGGGTCATTTGGTTGCTGCCTCCCCTGTTCAGATTGTTTTGGCTAGCTTTGTTTCCAATGGCAAGCAATCTAAGTCTGCAAAGAGGATGAAGAATGTATCTGCCCTAGAAAAGGTTTCCACAGCTGGTGGCCAAAGCAGTTCACCATCAAGAGGCACTCTCAGTGAGTCTTCAGGTGGGGTTGGGAGCGGGAGCCCACTTAACCAAAGCACAGGAGCCTGCAACAATGACAACAGCAACAATAACAACAACATTAACAACATCAACAGCACCACCCCAACACAAGGCTTTTCAGGCATGCCCTGGAAGTAA 1110 0.5243 MSMSGSDMATREQFTVGMHSPQPQPQHQQPQLHQNMRLDYGAADGADIFAAPTININGGESSPVGVPPGLGLGQAHPQAMVGNSTEQLKRKRGRPRKYGPDSGMALSLNTTPTPGGSTVPVGQSGGAFPANPLSDSASAGTGKRRGRPRGSVNKIKKSSKFSGLGTFFAPHVITVKAGEDLSARIMSISQSGSRNVCILSANGSISNVTLRQPASSGGTVTYEGRFEILSLGGSLFLPENGSQSERAGGLSVSLSGPDGRVLGGGVAGHLVAASPVQIVLASFVSNGKQSKSAKRMKNVSALEKVSTAGGQSSSPSRGTLSESSGGVGSGSPLNQSTGACNNDNSNNNNNINNINSTTPTQGFSGMPWK 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00174 369 CDD DUF296 170 283 IPR005175 -
Spst9g00174 369 Gene3D - 170 303 - -
Spst9g00174 369 ProSiteProfiles PPC domain profile profile. 165 306 IPR005175 -
Spst9g00174 369 MobiDBLite consensus disorder prediction 304 369 - -
Spst9g00174 369 MobiDBLite consensus disorder prediction 1 33 - -
Spst9g00174 369 MobiDBLite consensus disorder prediction 104 120 - -
Spst9g00174 369 MobiDBLite consensus disorder prediction 292 369 - -
Spst9g00174 369 Pfam Plants and Prokaryotes Conserved (PCC) domain 170 284 IPR005175 -
Spst9g00174 369 SUPERFAMILY AF0104/ALDC/Ptd012-like 168 285 - -
Spst9g00174 369 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 35 346 IPR039605 GO:0003680
Spst9g00174 369 SMART AT_hook_2 142 154 IPR017956 GO:0003677
Spst9g00174 369 SMART AT_hook_2 89 101 IPR017956 GO:0003677
Spst9g00174 369 MobiDBLite consensus disorder prediction 81 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g00174 Spst-Chr9 1560518 1563349 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g00174 3 369 AT-hook Motif Nuclear Localized (AHL) Family AT2G33620 45.153 3.47e-76 237
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g00174 - - pvu:PHAVU_009G008300g 550.436
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g00174 9 1560518 1563349 Spst9g00174 9 1560518 1563349 ECH