Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00172 ATGGCGTACCAAGCGATCCAGGGTCCGAGTTCGGGATCGAGTTCGGGGTTTCAGCTACTGAATTCTCCTTTCGGAGACACCACTTACACCAAAGTCTTCGTCGGAGGGTTGGCCTGGGAGACTCAGAGCGAAACCATGCGCCGCTACTTCGAGCAGTTCGGCGAGATTCTCGAGGCCGTCGTCATCACCGATAAGAACACAGGGCGATCCAAGGGCTATGGTTTCGTGACTTTCCGGGATCCCGAGGCTGCAAGGAGAGCGTGTGCTGATCCAACTCCTGTTATTGATGGTAGAAGGGCGAACTGTAACTTGGCTTCACTTGGTCGACCACGACCCCCTTTGCCTTATGGACGGGTAAGACCTGCCTCCCCTTATGTTGGAAGTGTGCAACCAGCTCGAGGTGCTTATGTAGGAGGCTTTGGGTACCAGCAACCGCTTTCCTACAGCTATCAACAAGGATTAGTTTACCCTCCTTATGGGTATACGACATATGGACCTGAGTACATATACCCACAGAGTCTGTACAACCCATATGTGGGGCAACAGTACCTTCAGTTATATGGAGTGCCTGGAACAGTGAATACAAATATTTATCCATATGGACAATTGGGTCAGGCTATTCCTAGTGGTCATGCTGGTTATTCGGCAATGCAGGGTTATACAGTACCAGGTCATCAGATTGTTCCATATGGTGGATCCAATGTTAATGCCATAACAACTTCACCTATGCCTGCCATTCAAGCTTCATTTCCTAGTGGAATTGCTGCACCAGTTCCTGGCCAACCACAATTTATTGTTTCTGCTCCTTCTTCTCAGTTCATGCAAGGTAGTGGTCCTGACCAAACAGCTGGGTGA 855 0.4971 MAYQAIQGPSSGSSSGFQLLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACADPTPVIDGRRANCNLASLGRPRPPLPYGRVRPASPYVGSVQPARGAYVGGFGYQQPLSYSYQQGLVYPPYGYTTYGPEYIYPQSLYNPYVGQQYLQLYGVPGTVNTNIYPYGQLGQAIPSGHAGYSAMQGYTVPGHQIVPYGGSNVNAITTSPMPAIQASFPSGIAAPVPGQPQFIVSAPSSQFMQGSGPDQTAG 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00172 284 SUPERFAMILY RNA-binding domain, RBD 29 141 IPR035979 GO:0003676
Spst9g00172 284 Gene3D - 5 115 IPR012677 -
Spst9g00172 284 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 30 107 IPR000504 GO:0003723
Spst9g00172 284 PANTHER BOULE-RELATED 11 249 - -
Spst9g00172 284 SMART rrm1_1 31 103 IPR000504 GO:0003723
Spst9g00172 284 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 32 88 IPR000504 GO:0003723
Spst9g00172 284 CDD RRM_RBM24_RBM38_like 30 105 - -
Spst9g00172 284 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 24 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g00172 Spst-Chr9 1543469 1546207 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g00172 19 106 C2H2 Transcription Factor Family AT2G19380 43.182 3.04e-17 79.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g00172 9 1543469 1546207 Spst9g00172 9 1543469 1546207 ECH