Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00168 ATGGAGGATGGTGAGAAACCCACGGGTAATTCCCATGGCATTGCTGATATGGATGTTGTTGATGCGGCTTTGCATGGCCAGCGTGTGGCATCTTCCCCTACTCACAATTCCCCTGCTCAGCTACAGCAGGATCAAGTAATGGTCGAACAGGGTGATGATAACAAAAACGGCGATTCTGATCCTAGTCTTGTGCCAGAGACCAGCGTAATTAGCGAGAATCAGTTTGAGCCTGAAGATGCCAAGACCGTTTCGCACCAAGAACTGATCACTCCAAAGCCTAAAGAAAAGAACATTAGAGAAATGAAGAATGTGCTAAATGATACTGAGATGACTGATTATGATGAGTATGGCACGCCTCTGGACCGAGAAACATTTATGAAAGAGCTTGAGAATTTCTACAGGGAACGGTCCTTGGAATTTAAGCCTCCTAAGTTTTATGGAGAGCCACTAAATTGCCTTAAGTTGTGGAGAGCTGTTATCAGACTTGGTGGCTATGATGTGGTAACTGGATCCAAGTTGTGGCGACAAGTAGGAGAGTCTTTCAACCCCCCAAAGACATGCACTACAGTCTCATGGACATTTAGAATCTTTTATGAGAAGGCACTTTTGGAGTACGAAAAGCATAAGAGAGAGACTGGGGAGCTACAGCTCCCTGTTGGATCATTCCATCAATCTTCAAATGTGGAAAAAGAGACTGCTGTTTACCAAGCTCCAGGCTCAGGTAGGGCACGAAGGGATGCCGCAGCCCGGGCAATGCAAGGTTGGCATGCTCAACGCCTTCTTGGATATGGTGAGGTTGCTGAGCCAGTTATTAAGAGGACGCCAGCTGGTATGGAACATACTGAGAAAGCTGCAAATATTGAAGGAGATAGGCAGTTAAGTTACTGGTTTTGTCAGCCAAAAGACAGCAGACAAACTGAAGAAGAGAATATGCCCTGGGAGATCCTTTTGGCATTTTCTCGATGTCAATTGGTCACAGCAGTGGTGGACATTGGACCCCCAGCTGACTGGGTGAAGATCAATGTGCGAGAAACTAAGGATTGTTTTGAGGTATATGCCCTAGTTCCTGGGCTACTTCGTGAGGAGGTGCGAGTCCAATCAGATCCAGTTGGACGTCTCGTTATAACTGGTCTACCAGAACACATTGACAATCCATGGGGAATTACCCCCTTCAAAAAGGTAGTGAACTTACCTGCAAGAATTGACCCGCTTCAGACATCCGCTGTTGTTAGTTTGCATGGTCGACTATTTGTACGGGTTCCTTTTGAGCAGGGAGCTGTGTGA 1284 0.4642 MEDGEKPTGNSHGIADMDVVDAALHGQRVASSPTHNSPAQLQQDQVMVEQGDDNKNGDSDPSLVPETSVISENQFEPEDAKTVSHQELITPKPKEKNIREMKNVLNDTEMTDYDEYGTPLDRETFMKELENFYRERSLEFKPPKFYGEPLNCLKLWRAVIRLGGYDVVTGSKLWRQVGESFNPPKTCTTVSWTFRIFYEKALLEYEKHKRETGELQLPVGSFHQSSNVEKETAVYQAPGSGRARRDAAARAMQGWHAQRLLGYGEVAEPVIKRTPAGMEHTEKAANIEGDRQLSYWFCQPKDSRQTEEENMPWEILLAFSRCQLVTAVVDIGPPADWVKINVRETKDCFEVYALVPGLLREEVRVQSDPVGRLVITGLPEHIDNPWGITPFKKVVNLPARIDPLQTSAVVSLHGRLFVRVPFEQGAV 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00168 427 MobiDBLite consensus disorder prediction 29 50 - -
Spst9g00168 427 CDD ARID 121 206 - -
Spst9g00168 427 ProSiteProfiles ARID domain profile. 119 210 IPR001606 GO:0003677
Spst9g00168 427 FunFam AT-rich interactive domain-containing protein 3 119 218 - -
Spst9g00168 427 SUPERFAMILY ARID-like 108 217 IPR036431 GO:0003677
Spst9g00168 427 FunFam AT-rich interactive domain-containing protein 3 318 426 - -
Spst9g00168 427 Pfam ARID/BRIGHT DNA binding domain 122 206 IPR001606 GO:0003677
Spst9g00168 427 Gene3D - 329 426 IPR008978 -
Spst9g00168 427 SMART bright_3 120 211 IPR001606 GO:0003677
Spst9g00168 427 SMART ARID_2 116 206 - -
Spst9g00168 427 MobiDBLite consensus disorder prediction 1 65 - -
Spst9g00168 427 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 38 424 IPR045147 GO:0006357
Spst9g00168 427 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 326 427 IPR002068 -
Spst9g00168 427 CDD ACD_sHsps_p23-like 342 421 - -
Spst9g00168 427 SUPERFAMILY HSP20-like chaperones 335 422 IPR008978 -
Spst9g00168 427 Gene3D - 120 218 IPR036431 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g00168 Spst-Chr9 1522107 1531164 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g00168 90 424 ARID Transcription Factor Family AT1G76510 64.688 1.56e-146 422
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Spst9g00168 ARID 4.3e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g00168 - - gmx:100777965 678.322
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g00168 9 1522107 1531164 Spst9g00168 9 1522107 1531164 ECH