Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00150 ATGGTCGCAATTAAGAGGGCAAAATGGGCTGTGTTGTGTTTGTTGTCAATGGCTTCTGCAGAAGTTGAATACCGATGCTTTGTTGGTGGGCTTGCTTGGGCCACCGACAACGATGCTCTTGAGAAAGCCTTCTCACAGTATGGCGAGATCATCGAATCGAAGGTCATCAATGACCGTGAAACTGGAAGGTCGAGAGGGTTTGGATTTGTCACCTTCGCCACAGAGCAGGCTATGAAAGATGCTATTGAAGGAATGAATGGCCAGAGCCTCGACGGCCGTAACATTACCGTCAACGCGGCTCAGTCCCGTGGAAGAGGAGGTGGTGGTTACGGAGGTGGAGGTGGTGGAGGATACGGAGGTGGTGGATACGGTGGCGGTGGTGGAGGTTATGGACGCGGTGGAGGAGGAGGTGGTTATGGTGGAGGTGGCCGCCGTGAAGGTGGCTATAACCGCAACGGTGGTGGTGGAGGTTATGGTGGAGGAGGTGGTGGTGGATACGGAGGAGGTGGTGGTGGATACGGAGGCGGTGGGAGGGACCGTGGATATGGTGACGGTGGGTCTCGTTACTCCAGAGGAGGTGGTGCTTCGGACGGTGGAAGCTGGAGGAATTAG 612 0.5572 MVAIKRAKWAVLCLLSMASAEVEYRCFVGGLAWATDNDALEKAFSQYGEIIESKVINDRETGRSRGFGFVTFATEQAMKDAIEGMNGQSLDGRNITVNAAQSRGRGGGGYGGGGGGGYGGGGYGGGGGGYGRGGGGGGYGGGGRREGGYNRNGGGGGYGGGGGGGYGGGGGGYGGGGRDRGYGDGGSRYSRGGGASDGGSWRN 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00150 203 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 27 95 IPR000504 GO:0003723
Spst9g00150 203 FunFam Glycine-rich RNA-binding protein GRP1A 18 126 - -
Spst9g00150 203 MobiDBLite consensus disorder prediction 169 203 - -
Spst9g00150 203 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 25 192 - -
Spst9g00150 203 SUPERFAMILY RNA-binding domain, RBD 24 145 IPR035979 GO:0003676
Spst9g00150 203 CDD RRM2_NsCP33_like 25 100 - -
Spst9g00150 203 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 24 102 IPR000504 GO:0003723
Spst9g00150 203 SMART rrm1_1 25 98 IPR000504 GO:0003723
Spst9g00150 203 Gene3D - 16 120 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g00150 Spst-Chr9 1278236 1282540 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g00150 26 97 Eukaryotic Initiation Factors Gene Family AT2G23350 45.833 1.96e-12 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g00150 - K13195 ccaj:109800681 165.236
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g00150 9 1278236 1282540 Spst9g00150 9 1278236 1282540 ECH