Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00147 ATGATGCACTGTGCTTACACGAACGGGAATATGGCTGGGGACATGACAGTGTTGGAAAGACAGAGGGCGAGGATGAAGTTGCAAGAAGAGCAAGGGTACTTTCCTGGGTTCAACGGTCTTTTCTCTTCTTCTCTTCATCCACAAGATTCCTTCATGCTCCCTGCTGATTCCGGTTGTGCACTTGGTGAAGTGGTGGCTCAGGCTCAGGCTCAGGCTCGCTCGATGAATAAGCCATCCGTTCCTGGGTTTGGTGCAAGTTCTTCAATTTCAAGGACTTTTAGTTGTCCACCTGCTTTGGTGGACCCCGAGCCCGAGCCCAGACCCACAGACTCCTCAATTGGGAAAGAGCGTTTCAAGAAAAGGAAACCCGACAAGCCTCACAATGCTAAGTTTCTTTCAGAAAATGATATGAAACACAAGAGGATCAAAGTGGGCGTCGACGACGATGGAGAATCCAAGATCACAGGGAGCCCCAACAGTATCACAACAAACACTAATAGCAACAGAAGAGAAACTTGTGCAGATACTTCAAATTCAAAGCAAAATTCCAAAGCCTCCGAGGTCCAAAATCAAAAGCTTGATTATATTCATGTCCGCGCGCGTCGTGGCCAAGCCACCGATAGCCATAGCTTGGCTGAAAGAGTAAGAAGGGAAAAAATTAGTGAGAGAATGAAGTATTTGCAAGATTTAGTACCCGGTTGCAACAAAATCACGGGAAAAGCTGGAATGCTTGATGAAATCATCAACTATGTTCAATCTCTTCAAAGACAGGTTGAGGTAAGAGTTAGGTGCATCTCCTCTTTTTCTTCGACATTGATCTATCCGAAATTCATGTCAACCCCATTTCATTTGCGTGGATATCAAATACTTATTATGTATATATATGATCACTATATGCAGTTTCTGTCAATGAAATTAGCTGCTGTGAACCCGAGGCTTGACTTCAGTATTGATGATCTCTTTGAAAAAGAAGGGTTTCCTGCTTGTGCTGCGAATTTTCCAAACATTGGAATGTCATCAGATATGTCTAACCCTGCCTATCTTCAATTTAATTTACCACCACAACAAATGGTTTCGTATGGAGGATTAGACACGGGGATTAACCCTTCCGATATAGACCTAAAAAGGACTATGAGTGCCCATGTATCAGGGCCTGAAACATATCTTCACTCGTCATGTTTCACACAAATGCTACCCTCTTCAACATGGGAAGAAAGTGATTTCCAAAACCTTTGCAATTTGGATTTTGATCAAGTGCGAGCCACATCTTTCCCTTCTCATCTGTTCTCAGGTCTGGTTGAAGCTGGCAATCATCTAAAGATGGAGATGTAG 1332 0.4347 MMHCAYTNGNMAGDMTVLERQRARMKLQEEQGYFPGFNGLFSSSLHPQDSFMLPADSGCALGEVVAQAQAQARSMNKPSVPGFGASSSISRTFSCPPALVDPEPEPRPTDSSIGKERFKKRKPDKPHNAKFLSENDMKHKRIKVGVDDDGESKITGSPNSITTNTNSNRRETCADTSNSKQNSKASEVQNQKLDYIHVRARRGQATDSHSLAERVRREKISERMKYLQDLVPGCNKITGKAGMLDEIINYVQSLQRQVEVRVRCISSFSSTLIYPKFMSTPFHLRGYQILIMYIYDHYMQFLSMKLAAVNPRLDFSIDDLFEKEGFPACAANFPNIGMSSDMSNPAYLQFNLPPQQMVSYGGLDTGINPSDIDLKRTMSAHVSGPETYLHSSCFTQMLPSSTWEESDFQNLCNLDFDQVRATSFPSHLFSGLVEAGNHLKMEM 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00147 443 FunFam Basic helix-loop-helix transcription factor 201 272 - -
Spst9g00147 443 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 204 254 IPR011598 GO:0046983
Spst9g00147 443 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 202 268 IPR036638 GO:0046983
Spst9g00147 443 CDD bHLH_AtBPE_like 194 320 - -
Spst9g00147 443 Gene3D - 201 271 IPR036638 GO:0046983
Spst9g00147 443 MobiDBLite consensus disorder prediction 127 150 - -
Spst9g00147 443 Pfam Helix-loop-helix DNA-binding domain 208 255 IPR011598 GO:0046983
Spst9g00147 443 MobiDBLite consensus disorder prediction 153 189 - -
Spst9g00147 443 MobiDBLite consensus disorder prediction 94 189 - -
Spst9g00147 443 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 112 351 IPR024097 GO:0006355
Spst9g00147 443 SMART finulus 210 260 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g00147 Spst-Chr9 1228880 1231179 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g00147 8 357 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G34530 38.727 3.87e-53 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Spst9g00147 HLH 2.6e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g00147 - - gmx:100798855 539.265
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g00147 9 1228880 1231179 Spst9g00147 9 1228880 1231179 ECH
Spst9g00147 9 1228880 1231179 Spst2g00791 2 6679009 6680359 ECH