Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00116 ATGGCTAAACCGAAGGCTCCAAGGCGAACCCTAGAGTCATACTCAGTCAAACACATAAGCAAAACCATTAGAGCTGGCGATTGCGTGCTCATGCGGCCATCGGATCCGGCGAAACCGTCTTATGTTGCCAGGATCGAGCGGATCGAGGCCGACGCGCGCGGGGCGAACGTGAAGATTAACGTGCGGTGGTACTACCGGCCGGAGGAGTCAATCGGCGGTCGCCGCCAGTTTCATGGCTCGAAGGAGGTTTTTCTCTCCGATCACTTCGATGTTCAGAGCGCCGACACAATCGAAGGCAAGTGTACTGTCCACAGCTTCAAGAGCTACACGAAACTGGATGCTGTTGGCAACGACGATTTCTTCTGTCGGTTCGAGTACAATTCCTCCACTGGCGCCTTCAATCCTGATAGAGTTGCCGTGTATTGTAAATGTGAGATGCCTTACAACCCTGACGACCTAATGGTCCAATGCGAGGGCTGCAGCGACTGGTGTCTTTGTGATTTTGTGGAAACTGCCGATAACTTCTCCCCAACCCTTCTGAGTTCTGCTTATACAAGCATGATACTGCATGTTCACTGGAGCCGCCCATTGCACTGCATGTTCACCATCATCGACAACCTCCATGACCTCCCACTACTCTACATTCTCTTGTTCCATCCTGCTTGCATAGACATGACTGTAGAAGAAGCCAAAAGACTTGACCACTTCTTTTGTGAAAGCTGCTCCGCTGAAGGTCAAAAAAAGTTGCAGAACTCTCATTCTGCTTCTAGACACTCAGATACAAAGGCTTTGGAGAAGTTGATTTCTTCGTCTATTATCTATTCGTTTACTAGATTCTATTATTCCATGGAACTGCCATGGAATAACATCAATCCGTTATTGTTGAAGTTGACTGCTATTGGTCATTATAAGGATTTACATGAGAGTGTAGTTTTCATGTGGATACTAAACGCCGTCGTAGGGGCCAGACAACAACGGAGACAAAGTTATGTTGTAGTAAGTTGTAGTAGTTCACTTTCATGGAAAGAGACTAGTTTGGAAATGTTTCATGTCTGTTTGGTTGGAGTACTCATGCAGTTTCCTTTGGAAGTGGAGGACGTGTTTGTGTAA 1110 0.4703 MAKPKAPRRTLESYSVKHISKTIRAGDCVLMRPSDPAKPSYVARIERIEADARGANVKINVRWYYRPEESIGGRRQFHGSKEVFLSDHFDVQSADTIEGKCTVHSFKSYTKLDAVGNDDFFCRFEYNSSTGAFNPDRVAVYCKCEMPYNPDDLMVQCEGCSDWCLCDFVETADNFSPTLLSSAYTSMILHVHWSRPLHCMFTIIDNLHDLPLLYILLFHPACIDMTVEEAKRLDHFFCESCSAEGQKKLQNSHSASRHSDTKALEKLISSSIIYSFTRFYYSMELPWNNINPLLLKLTAIGHYKDLHESVVFMWILNAVVGARQQRRQSYVVVSCSSSLSWKETSLEMFHVCLVGVLMQFPLEVEDVFV 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00116 369 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 216 259 IPR013083 -
Spst9g00116 369 SUPERFAMILY FYVE/PHD zinc finger 218 247 IPR011011 -
Spst9g00116 369 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 136 179 IPR013083 -
Spst9g00116 369 PANTHER OS08G0421900 PROTEIN 5 262 - -
Spst9g00116 369 SMART BAH_4 21 137 IPR001025 GO:0003682
Spst9g00116 369 ProSiteProfiles BAH domain profile. 21 137 IPR001025 GO:0003682
Spst9g00116 369 CDD BAH_BAHCC1 22 157 - -
Spst9g00116 369 Gene3D - 2 135 IPR043151 -
Spst9g00116 369 Pfam BAH domain 22 136 IPR001025 GO:0003682
Spst9g00116 369 SUPERFAMILY FYVE/PHD zinc finger 130 164 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g00116 Spst-Chr9 936844 941738 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g00116 41 139 Core DNA Replication Machinery Family AT4G14700 31.313 2.73e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g00116 K25868 - gmx:100787968 400.979
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g00116 9 936844 941738 Spst9g00116 9 936844 941738 ECH