Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00112 ATGAAGATCCAGTGTGATGTGTGTGACAAAGTGGAAGCCTCAGTCTTCTGTCCTGCAGATGAAGCTGCTCTTTGCCATGGCTGTGATCGCACCATTCACCACGCCAACAAGCTTGCAACCAAACACCCTCGCTTCTCTCTCCTCTACCCCACCTCCAAAGACTTTCCTCTTTGTGATATTTGCCAAGAGAAGCGTGCATATCTATTTTGCCAAGAAGACAGGGCATTGCTATGCAGGGAATGTGACCTTCCAATCCACAGAGCGAATGAGCTTACCCAGAAACATAACAGGTTTCTTCTCACGGGTGTGAAGCTCTCTGCTACTTCTTTGGACCCTGCTTCCTCCTCCACCAATTGCACTGATACACTCACTGCCTCGGAAGGAAGAAACTCTCGATCTAGAATCAGCAGACCCAGATCAGTTTCCAATGAAAATCTCAGCTCTTCTTGCAAGGTCGAAGACAACGTGGCCAGTGACACTGGTTCGGTTTCGACCAGCAGCATTTCTGAGTACTTGATCGAGACAATACCCGGTTACTGTTTCGAAGAGCTCCTTGATGCTTCATTTGCACCTAATGGTTTCTGTAAGAAGCAGAACTATGATCATCGTTGGGCGTTTCAGGACCAGGATCCAGTTCAAGTTAGGATGTGTTTGGTTGGAGTTATGGAAATTCCAAATGGGGATGTAATGGTTGTGCCGTTCCTTAAACTAGTCATAAATTGA 723 0.4675 MKIQCDVCDKVEASVFCPADEAALCHGCDRTIHHANKLATKHPRFSLLYPTSKDFPLCDICQEKRAYLFCQEDRALLCRECDLPIHRANELTQKHNRFLLTGVKLSATSLDPASSSTNCTDTLTASEGRNSRSRISRPRSVSNENLSSSCKVEDNVASDTGSVSTSSISEYLIETIPGYCFEELLDASFAPNGFCKKQNYDHRWAFQDQDPVQVRMCLVGVMEIPNGDVMVVPFLKLVIN 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00112 240 CDD Bbox1_BBX-like 5 47 - -
Spst9g00112 240 SUPERFAMILY B-box zinc-binding domain 50 90 - -
Spst9g00112 240 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Spst9g00112 240 FunFam B-box zinc finger protein 21 1 98 - -
Spst9g00112 240 CDD Bbox1_BBX-like 57 100 - -
Spst9g00112 240 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Spst9g00112 240 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 204 - -
Spst9g00112 240 SMART bboxneu5 4 47 IPR000315 GO:0008270
Spst9g00112 240 SMART bboxneu5 53 100 IPR000315 GO:0008270
Spst9g00112 240 Pfam B-box zinc finger 56 96 IPR000315 GO:0008270
Spst9g00112 240 Gene3D Classic Zinc Finger 1 97 - -
Spst9g00112 240 MobiDBLite consensus disorder prediction 109 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g00112 Spst-Chr9 860343 861422 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g00112 1 201 C2C2-CO-like Transcription Factor Family AT1G75540 51.659 7.67e-64 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Spst9g00112 zf-B_box 8.2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g00112 - - gmx:100800981 338.961
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g00112 9 860343 861422 Spst9g00112 9 860343 861422 ECH
Spst9g00112 9 860343 861422 Spst2g02593 2 25665880 25667933 ECH
Spst9g00112 9 860343 861422 Spst3g03819 3 88160147 88162744 ECH
Spst8g01973 8 26722827 26724082 Spst9g00112 9 860343 861422 PCT