Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00109 ATGGAGGTAGCCGTTGACAAAGCGTTGAAACAGAGTTTAAGAAGAGAGTTCATCGTTCAGCAAACGCACTGCGAGGATTTTTTCTGCCTGAACGCTAACACCGTCGCCGGCGACGATTTCTCCGTCGACGACCTTTTTGACTTCTCAGACGGCGCTCTTCACTACGAACAACAAGAATACGACGAAGGAAAGAAAAGTTTATCCGCTTCGTCGCAGTCACAAGACCGCGGGGAAGACGATAGCAACTCCAATTCCACCGGCGTTTCCTATGATTCACTTTTCTCCGCCGAATTAGTCGTTCCGGCCGGTGATTTGGAGGACCTAGAGTGGGTTTCACACTTTGTTGACGATTCTCTCCCGGAGCTGTCACTTTTATACCCGGTTCGTTCGGAGGAAGCGAACCGGCGGGTTGAACCGGAACCCTCAGCGAAGAAAACGCCTCGTTTTCCGTGTGAAATGAAAATAACTACCAAGGCGAGAACTGTACGGAATAGAAAGCCTAACGCTCGCGTGTGGACTTTGGGCCCGTTGCTGTCGCTCCCGTCCTCGCCGTCTTCGTGCTCTTCTTCGGTGACGGAGCCTCCCGCGAAGAAGCAGAAGAAGCGGGCCGAGACCCAGCCCGTTGGGACCCAGGTTCAGCGGCGGTGCAGTCACTGTCAGGTGCAGAAGACGCCGCAGTGGAGGACGGGCCCACTGGGCGCGAAAACCCTCTGCAACGCATGCGGGGTTCGGTACAAATCGGGTCGACTTTTTTCGGAGTATAGACCGGCTTGTAGCCCAACTTTCTGCAGCGATATTCACTCCAATAGTCACCGGAAAGTGTTGGAGATTCGGAAGAAGAAAGGGGTGGCTGGACCGGACACCGGTTCGGCCCAGGCCCAAATGGTTCCCACCTGCTGA 900 0.5478 MEVAVDKALKQSLRREFIVQQTHCEDFFCLNANTVAGDDFSVDDLFDFSDGALHYEQQEYDEGKKSLSASSQSQDRGEDDSNSNSTGVSYDSLFSAELVVPAGDLEDLEWVSHFVDDSLPELSLLYPVRSEEANRRVEPEPSAKKTPRFPCEMKITTKARTVRNRKPNARVWTLGPLLSLPSSPSSCSSSVTEPPAKKQKKRAETQPVGTQVQRRCSHCQVQKTPQWRTGPLGAKTLCNACGVRYKSGRLFSEYRPACSPTFCSDIHSNSHRKVLEIRKKKGVAGPDTGSAQAQMVPTC 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00109 299 PANTHER GATA TRANSCRIPTION FACTOR 29 293 - -
Spst9g00109 299 Pfam GATA zinc finger 216 249 IPR000679 GO:0006355|GO:0043565
Spst9g00109 299 ProSitePatterns GATA-type zinc finger domain. 216 241 IPR000679 GO:0006355|GO:0043565
Spst9g00109 299 MobiDBLite consensus disorder prediction 64 87 - -
Spst9g00109 299 Gene3D - 209 260 IPR013088 GO:0006355|GO:0008270
Spst9g00109 299 ProSiteProfiles GATA-type zinc finger domain profile. 210 246 IPR000679 GO:0006355|GO:0043565
Spst9g00109 299 PIRSF Txn_fac_GATA_plant 10 298 IPR016679 GO:0003677|GO:0005634|GO:0045893
Spst9g00109 299 MobiDBLite consensus disorder prediction 180 194 - -
Spst9g00109 299 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 210 271 - -
Spst9g00109 299 MobiDBLite consensus disorder prediction 180 209 - -
Spst9g00109 299 CDD ZnF_GATA 215 272 IPR000679 GO:0006355|GO:0043565
Spst9g00109 299 MobiDBLite consensus disorder prediction 59 87 - -
Spst9g00109 299 FunFam GATA transcription factor 206 292 - -
Spst9g00109 299 SMART GATA_3 210 264 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g00109 Spst-Chr9 822684 823679 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g00109 39 286 C2C2-Gata Transcription Factor Family AT4G36240 43.411 1.07e-53 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Spst9g00109 GATA 9.4e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g00109 - - gmx:100780311 484.952
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g00109 9 822684 823679 Spst9g00109 9 822684 823679 ECH
Spst9g00109 9 822684 823679 Spst2g02585 2 25599826 25600892 ECH