Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00089 ATGGACGAGGAGGAACGTCACCAAGGAGGTTCTGTCGCGGGGGTTGTTGCCGCCGACCAAACCCCACAGCAACTCGTCGCCAGGGCCATAGCCCCCGTCAAGAAGGATTTCCTCCGGCCCCCTCCTGTTCGGTCTTCCGCTCCGACCGACGACGTTTCCACTTCCAATGAAAACAAGACCTCCGTTCTGGCTAAGGAGAAGAAGTCTAAGCGCCAAATCAAACGCGAACGTCGTCAGGAACAAAAGTCAGCACGAAATCTATGTCCCGAGATTTCGAAGACGGGGGATGTTAGTTCATGTCCTTACAAAGACAAGTGTCGTTTCAGCCATGATTTGGAAGGCTTCAAGGCGCAGAAACCGTCTGATCTAGAGGGACAATGTCCGTTCATTAAAACTGGAGGCTCTTGCCCTTATGGTTTAGCGTGTAGATTTTCGAGTACGCATGAAGGTGGTGTGCCTTCTAGCGATCCGAATGGTTTGAAGAATAGTTCCGAGGTGAATGGGTTGAGCAAGGATGTTCAAAAACTTTTGTGGAAAAATAAGATGAACTTCTCCAAGGCAGATCTCAAACTCAAAAGTCTCGGCCTCCTGGGACCATCTAAGTCAAAAAGGAATGACTTGGAAAATAAAGATGGAGTTGATGCTGGTTCAAATAAGTGTGATCAATCCGATGGCAGTGGCTCTTGTGTTGTTAGGAAAGATGATGACAATGACAGAGATGGAAAATCTGAATCTGATGAACTTTGTCCCCTGAAGCGAAGAAAAACTGAGGAATGTTGCAATCCCAAAGAGGCAGAAAATGAAGAGAATTGTGGTCCTAAGGAGGCAGAAAATGAAGTTTGTGTGACTGGGCTTCATACGGCTGAAACAGGTGTTAGCGTTACTGAGCAAATTGTTGAAAGAAGTTGCACAAAATCAGAAGCTGATGCTATCACCCCAGAAACTGATCGAAGCCTGAAGTCTCACTCACGTGAGAAGAAGCTTATTGATTTTAGGGAGAAGTTGTATCTTGCACCCTTGACCACTGTTGGCAATCTTCCTTTCCGGAGAGTTTGCAAAGTTTTAGGTGCTGATGTAACTTGTGGTGAAATGGCAATGTGCACAAATCTTTTGCAGGGTCAAGCGTCAGAATGGGCATTGCTAAGACGACATTCATCTGAAGATTTATTTGGTGTCCAAATCTGTGGGGCATATCCAGATACTGTGGCACGCACAGTTGAACTAATTGAACAAGAATGTACTATAGATTTTATTGATATAAATATGGGTTGCCCTATTGACATTGTTGTGAATAAGGGTGCTGGATCAGCTCTTCTAACAAAACCTATGCGGATGAAAAGTATCGTAGAAGTAGCCTCGGTTACAGTGGATAAACCAATAACTATCAAGGTACGGACTGCTTATTTTGAAGGGAAGAACCGCATTGATTCTTTGATAGCAGACATTGGCTCTTGGGGAGCCAGTGCCGTTACAATACATGGTAGGTCACGTCAACAACGCTATAGCAAGCTTGCTGACTGGGATTATATATACCAGTGTGCCAGGAAAGCCCCTACTACATTGCCAGTAGTGGGGAATGGAGATGTTTTTTCATTTGTAGACTGGAACAACCACAGAACTGAATGCCCTGAACTTGCTACGGACATGATTGCTCGTGGTGCACTGATTAAACCTTGGATATTTACGGAGATCAAGGAACAAAGACATTGGGACATCAGTGCTGGCGAGCGTCTAAATATTTTCAAGGATTTTGTTAATTTTGGTCTTGAACACTGGGGTTCTGACACAAAAGATGCAATGATTGTGTTGGGGGTTGAGACAACAAGGCGGTTCTTGTTGGAATGGCTTAGCTACACTTGCAGGTATATACCTGTTGGTCTTTTGGATGTGGTTCCACAACGATTAAACTGGCGTCCACCTTCTTACTGTGGGCGTGATGAGCTTGAGACACTAATGGCCTCAGACTCTGCTGCTGATTGGATAAGATTAAGAATGATTGCATTGGAGATAAGATGGGGAAGCGAAGTACCTACTGACACTCTAAAGTGGTAG 2052 0.4488 MDEEERHQGGSVAGVVAADQTPQQLVARAIAPVKKDFLRPPPVRSSAPTDDVSTSNENKTSVLAKEKKSKRQIKRERRQEQKSARNLCPEISKTGDVSSCPYKDKCRFSHDLEGFKAQKPSDLEGQCPFIKTGGSCPYGLACRFSSTHEGGVPSSDPNGLKNSSEVNGLSKDVQKLLWKNKMNFSKADLKLKSLGLLGPSKSKRNDLENKDGVDAGSNKCDQSDGSGSCVVRKDDDNDRDGKSESDELCPLKRRKTEECCNPKEAENEENCGPKEAENEVCVTGLHTAETGVSVTEQIVERSCTKSEADAITPETDRSLKSHSREKKLIDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGAYPDTVARTVELIEQECTIDFIDINMGCPIDIVVNKGAGSALLTKPMRMKSIVEVASVTVDKPITIKVRTAYFEGKNRIDSLIADIGSWGASAVTIHGRSRQQRYSKLADWDYIYQCARKAPTTLPVVGNGDVFSFVDWNNHRTECPELATDMIARGALIKPWIFTEIKEQRHWDISAGERLNIFKDFVNFGLEHWGSDTKDAMIVLGVETTRRFLLEWLSYTCRYIPVGLLDVVPQRLNWRPPSYCGRDELETLMASDSAADWIRLRMIALEIRWGSEVPTDTLKW 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00089 683 ProSiteProfiles Zinc finger C3H1-type profile. 82 113 IPR000571 GO:0046872
Spst9g00089 683 FunFam tRNA-dihydrouridine(47) synthase [NAD(P)(+)] 78 157 - -
Spst9g00089 683 CDD DUS_like_FMN 334 569 IPR035587 -
Spst9g00089 683 FunFam tRNA-dihydrouridine(47) synthase [NAD(P)(+)] 330 572 - -
Spst9g00089 683 MobiDBLite consensus disorder prediction 228 246 - -
Spst9g00089 683 MobiDBLite consensus disorder prediction 148 166 - -
Spst9g00089 683 SMART c3hfinal6 83 112 IPR000571 GO:0046872
Spst9g00089 683 SMART c3hfinal6 123 150 IPR000571 GO:0046872
Spst9g00089 683 ProSitePatterns Uncharacterized protein family UPF0034 signature. 418 436 IPR018517 GO:0008033|GO:0017150|GO:0050660
Spst9g00089 683 MobiDBLite consensus disorder prediction 1 90 - -
Spst9g00089 683 MobiDBLite consensus disorder prediction 197 246 - -
Spst9g00089 683 Gene3D - 77 154 - -
Spst9g00089 683 Pfam Dihydrouridine synthase (Dus) 337 571 IPR035587 -
Spst9g00089 683 Gene3D Aldolase class I 329 572 IPR013785 -
Spst9g00089 683 SUPERFAMILY FMN-linked oxidoreductases 334 653 - -
Spst9g00089 683 PANTHER TRNA-DIHYDROURIDINE(47) SYNTHASE [NAD(P)(+)]-LIKE 21 665 - -
Spst9g00089 683 Coils Coil 63 83 - -
Spst9g00089 683 MobiDBLite consensus disorder prediction 147 166 - -
Spst9g00089 683 MobiDBLite consensus disorder prediction 203 217 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Spst9g00089 Dus 1.9e-49 CL0036
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g00089 K05544 - gmx:100783494 1093.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g00089 9 682886 687040 Spst9g00089 9 682886 687040 ECH