Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00088 ATGGCCTCATCTAATCTCTCCACCCTGTGCACTTCTTCCCTCTGCAAACCCTCCTCTTTCCCTTTCTGCAACACACCAACCTTCACCACCAACAATAACACTTTTCTTCTCTACAACAACAACTCCTTCCAAACCCTGCTCTCTCATTCCATACACAACCCCCGTTACCCTCTGCCTCTCGCATGCACAAAAGACACAAACACTTTCTCCTCCTTCAATGATGACCAAAAGCCCCGGGAAGAGTGCGGCGTCGTAGGCATCTACGGCGACCCAGAAGCCTCGCGTCTCTGCTCCCTCGCCCTCCACGCCCTCCAGCACCGCGGCCAGGAAGGCGCCGGCATCGTCGCAGTCCACGACAACCTCTTCCACTCCGTCACCGGTGTCGGCCTCGTCTCCGACGTCTTCGACGAGTCCAAGCTCTCTCAGCTACCCGGCTCCTCCGCCATTGGCCACGTCCGCTACTCCACCGCCGGCCACTCCATGCTCAACAACGTCCAACCCTTCGTCGCCGGCTACCGCTTCGGCTCCGTAGCCGTCTCCCACAACGGTAACTTCGTGAATTACCGCTCCCTCCGCGCCAAACTCGAAGACAACGGCTCCATCTTCAATACCACCTCTGACACCGAGGTCGTCCTCCACCTCATCGCCACCTCCAAACACAGACCTTTCCTCCTCAGAATCGTGGACGCCTGCGAGAATCTCCAGGGCGCGTACTCCCTCGTGTTCCTCACCGAGGACAAGCTGGTGGCCGTGAGGGACCCCTTCGGGTTCCGACCCTTGGTGATGGGAAGGAGAAGCAACGGCGCAGTGGTTTTCGCTTCGGAGACATGTGCGCTGGATTTGATCGAAGCCACGTATGAGAGAGAGGTTTACCCGGGTGAGGTTATCGTGGTGGACCACACGGGCATCCAATCCCTCTGCCTCGTGTCTCATCCTGAGCCAAAGCAATGCATATTTGAGCATATATACTTTGCGCTTCCCAACTCTGTTGTCTTCGGTAGGTCTGTGTACGAGTCTAGGAGAAAATTCGGGGAAATATTGGCCACTGAGAGTCCCGTTGAGTGCGACGTTGTGATCGCTGTTCCTGATTCTGGGGTTGTAGCTGCGCTTGGTTACGCTGCAAAAGCTGGGGTTCCCTTTCAGCAAGGGTTGATTAGGTCACACTATGTGGGGAGGACTTTCATCGAGCCCTCGCAGAAAATAAGAGATTTTGGAGTGAAGCTTAAACTGTCTCCAGTGCGTGGCGTGCTTGAAGGGAAGAGGGTTGTGGTGGTGGATGACTCCATTGTGAGGGGCACCACGTCGTCCAAGATTGTGAGGCTTATAAAGGAGGCGGGTGCTAAAGAGGTTCACATGAGGATTGCGTGTCCACCCATTATTGGGTCGTGTTACTATGGTGTTGACACGCCCAGTAAGCAGGAGTTGATATCGAACAGGATGAGTGTGGAGGAAATAAGGGAGTTCATTGGGTCGGATTCGCTTGCTTTTCTTCCCTTGGACAGGTTGAAGATGTTGTTGGAGGAGGATGCTCCAAACTACTGCTATGCTTGCTTCTCGGGGAAGTACCCTGTTCAGCCCGAAGAACTTCAAGCGAAGAGCCTTGATGAGTTTGATTGGAACGATGGTTTGAATGGGAGTTTGAAATCTATTGATGCAGGGGGTTGGGTTAGAAACCAGGAAGGAGTGTCTGAGAATAAGATTGTCAGCGTATGA 1713 0.54 MASSNLSTLCTSSLCKPSSFPFCNTPTFTTNNNTFLLYNNNSFQTLLSHSIHNPRYPLPLACTKDTNTFSSFNDDQKPREECGVVGIYGDPEASRLCSLALHALQHRGQEGAGIVAVHDNLFHSVTGVGLVSDVFDESKLSQLPGSSAIGHVRYSTAGHSMLNNVQPFVAGYRFGSVAVSHNGNFVNYRSLRAKLEDNGSIFNTTSDTEVVLHLIATSKHRPFLLRIVDACENLQGAYSLVFLTEDKLVAVRDPFGFRPLVMGRRSNGAVVFASETCALDLIEATYEREVYPGEVIVVDHTGIQSLCLVSHPEPKQCIFEHIYFALPNSVVFGRSVYESRRKFGEILATESPVECDVVIAVPDSGVVAALGYAAKAGVPFQQGLIRSHYVGRTFIEPSQKIRDFGVKLKLSPVRGVLEGKRVVVVDDSIVRGTTSSKIVRLIKEAGAKEVHMRIACPPIIGSCYYGVDTPSKQELISNRMSVEEIREFIGSDSLAFLPLDRLKMLLEEDAPNYCYACFSGKYPVQPEELQAKSLDEFDWNDGLNGSLKSIDAGGWVRNQEGVSENKIVSV 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00088 570 CDD GPATase_N 82 332 IPR035584 -
Spst9g00088 570 ProSiteProfiles Glutamine amidotransferase type 2 domain profile. 82 301 IPR017932 -
Spst9g00088 570 Pfam Phosphoribosyl transferase domain 340 452 IPR000836 -
Spst9g00088 570 Hamap Amidophosphoribosyltransferase [purF]. 81 522 IPR005854 GO:0004044|GO:0009113
Spst9g00088 570 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 82 523 IPR029055 -
Spst9g00088 570 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 82 305 IPR029055 -
Spst9g00088 570 CDD PRTases_typeI 344 455 IPR000836 -
Spst9g00088 570 PANTHER AMIDOPHOSPHORIBOSYLTRANSFERASE 80 531 - -
Spst9g00088 570 Pfam Glutamine amidotransferase domain 162 279 IPR017932 -
Spst9g00088 570 Gene3D - 341 505 IPR029057 -
Spst9g00088 570 NCBIfam amidophosphoribosyltransferase 82 523 IPR005854 GO:0004044|GO:0009113
Spst9g00088 570 SUPERFAMILY PRTase-like 317 528 IPR029057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g00088 Spst-Chr9 678972 680684 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g00088 74 557 PRT Gene Family AT2G16570 80.825 0.0 805
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g00088 K00764 - gmx:548065 897.886
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g00088 9 678972 680684 Spst9g00088 9 678972 680684 ECH