Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00076 ATGAAGGAATCCTCGGATGCAGCGTCTCCTTCTTGCAGAGGTATATCCAAGAAACCTAATCTCCGAAGCTCCAAGGTCCAGACACCAAGCCCAGTTCAGTTTAGTTCCAAGACGCCGGACAAACAGACGCAGCGGATCCGCAACCGTGGCGTCGCGCTCTCCGTCGCAGACATAAAAAAAGTTGGCAAGGGTTTGCTGGATCGGAAGCGACACAGTGAAACGACATCGTTGCCGCAGAGCAAGAATGTGAGGAGGCAGATCTCACTGTGGCCTTCTTCTCCCAGTAAATCCAATATTACTGGCGATGAACCCTCCAAGCTTCCCGAAAAATATGAAATTTTGGATCAGTTCTTCGACCGGTTGGATACTTTAATTTTAATGTTCCGTCGGAAAGGGAAGACTCAATCCTTTACAGAGATTAGTTCTAGAATCGAATCTTTAACAGACAGGAGGTTTACTCACGCACATCTAGCGCAGTTGAAATTTATCTTGCCTGAGGCTATTGTTCTGAAGAAGTTTCTAGTGCGTGATGAACGGACCAGTTGTATGAAGCCGGATATTCACATCTCTTTAAACCCTGAGGCGGTAGAGTCTGATGCGAAGGTGCCCCCTCAACGTGGGAGAGTGTCATTAAAGAAGTTGTTTCACGCACGGCTAAGAGATTTTTGGGAATCTCATCCTGAGGTTGATGAAGTTCCAGAAGGAACATTGCCTGAGCCATTTAATTGCCCAAAGAAAGTGAACAATTTGGAAACACGTCTCCCAACAAAATTGTCACCCTGCGTGCGCTATAATGACATTGTTAATAATGTAGAGTCTGTTCACGTGGATGAAAAAATGTCTGTACCTGTCAAGATATCAGTTGAATTGCCAAATGAACATCTGGCAGCACCTTCTCACATTGCTCCATCCTTTAGAGCCCGATTTTCTTTGAAATTTAATCAAAATGTTGCAGTTAATGTGCAGCAAAATACTCAAATAGATTCATTACAACCTTCCCCTTCCAAGTTGGCTTCAGAAGCAGCTAGCAGTTCTCCAACAATTTTTGCTTCTCTGGAATCATCCAGTGCTCCCGCTTCTACTCCTAGCAAAACCATCGAGTACATAGATAACGAAGATGGATCTCTCGAAGCCATGGCAACTCAAGCAAAGAAAATCGACGAGTGCACAGAAAACAACGATGGTTCTCTGAAGAGCATTGATGCCCTGTCAACTCCGGCAAAACTTGTTTCTACTCCAATTAGGTTGATGAGTGCCACACCTGCATTGCGTTCACCCAAAAGACCCCTTGTGATGACCCCAGACGACCTCCCTATCAGTTCTTTGAACAAGTTAGCTAGGCGTCCACCTCGCTCAAGGTCATTGATATTTGACACTCCGGTAAAGAATAAGGAGGTTGTGAATGAAGATAATACCGGTGGCTTAGCAATAGATGATGATGTTTTTGACATCCTCCCTGGAAAACTTATCCAATCGATTAGAGAAAAGGAAAGAATGGCAATGGAGGAAAGAGACCCAGCTATCACTCAAGCAAAGAAACGGAAACAAATTATAGCCAACCTCCCCAAGCTCTTTGACATGATTCGTCAATTGCTTCGACAGCGGAATTGTATCACTAAAGCGGAGCTCGTAAGCAGGATAATCTCAAGTCACAGCGATATTGTTGACAGAAGCGAAGTTGAAGAGCAGCTAAATTTGTTACAAGAACTAGCACCCGAATGGATTTCGGAGAAGCAGGTCTCTAGTGGGGATTTGCTATTATTCATAAACAAAATGTTGAGCCCTGAAACCATTCGAGCATCTCTTGAAGAAGCAGTATAG 1821 0.4426 MKESSDAASPSCRGISKKPNLRSSKVQTPSPVQFSSKTPDKQTQRIRNRGVALSVADIKKVGKGLLDRKRHSETTSLPQSKNVRRQISLWPSSPSKSNITGDEPSKLPEKYEILDQFFDRLDTLILMFRRKGKTQSFTEISSRIESLTDRRFTHAHLAQLKFILPEAIVLKKFLVRDERTSCMKPDIHISLNPEAVESDAKVPPQRGRVSLKKLFHARLRDFWESHPEVDEVPEGTLPEPFNCPKKVNNLETRLPTKLSPCVRYNDIVNNVESVHVDEKMSVPVKISVELPNEHLAAPSHIAPSFRARFSLKFNQNVAVNVQQNTQIDSLQPSPSKLASEAASSSPTIFASLESSSAPASTPSKTIEYIDNEDGSLEAMATQAKKIDECTENNDGSLKSIDALSTPAKLVSTPIRLMSATPALRSPKRPLVMTPDDLPISSLNKLARRPPRSRSLIFDTPVKNKEVVNEDNTGGLAIDDDVFDILPGKLIQSIREKERMAMEERDPAITQAKKRKQIIANLPKLFDMIRQLLRQRNCITKAELVSRIISSHSDIVDRSEVEEQLNLLQELAPEWISEKQVSSGDLLLFINKMLSPETIRASLEEAV 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00076 606 MobiDBLite consensus disorder prediction 16 49 - -
Spst9g00076 606 MobiDBLite consensus disorder prediction 66 105 - -
Spst9g00076 606 PANTHER DNA REPLICATION FACTOR CDT1 17 605 IPR045173 GO:0003677|GO:0030174|GO:0071163
Spst9g00076 606 Pfam DNA replication factor Cdt1 C-terminal domain 489 580 IPR032054 -
Spst9g00076 606 CDD Cdt1_m 106 242 IPR014939 -
Spst9g00076 606 CDD Cdt1_c 484 603 IPR032054 -
Spst9g00076 606 Gene3D - 479 606 IPR038090 -
Spst9g00076 606 MobiDBLite consensus disorder prediction 1 51 - -
Spst9g00076 606 SMART CDT1_2 107 239 IPR014939 -
Spst9g00076 606 MobiDBLite consensus disorder prediction 76 102 - -
Spst9g00076 606 FunFam CDT1-like protein a chloroplastic 478 606 - -
Spst9g00076 606 SUPERFAMILY "Winged helix" DNA-binding domain 98 241 IPR036390 -
Spst9g00076 606 Pfam DNA replication factor CDT1 like 107 202 IPR014939 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g00076 Spst-Chr9 601748 604853 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g00076 23 604 Core DNA Replication Machinery Family AT2G31270 36.895 6.36e-90 287
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g00076 K10727 - gmx:100778818 759.599