Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00061 ATGGAGAAGAATGATGTGGGAGGGAGTTGGGTGTTGGAGTTCCTTCTTCGGAACCCACTCCCTAACAATAACCTAATCAAAAATCTGTTTAGGATAATTCCCGTTTCTGATGCCAATTCCCGCCTCAAGAAGACCCTTCTCCTTAAAACTCTTCAAGACCACTTCTCCACCCTCTCCATCGCCGAACCCCTTCTCAAAACCCTCGAGATCCTCGAGGAACTCCTTCGCCGCGATGCCTCTCCGATCACTGCCACCATGAGCGCAGCCTACTGTGCCGTCGCGGTGGAGTGCACACTCAAGTACCTGCAACTGAATCTCCACCACCACAACCCTGCCTACCTACGCGCCGTGAAAAGGATATGGCGCGCTAGGGTTCTTCACATGAACGGTTCCGGTTCCGGCGAGGGAAGCCTTCTGTTCTCAGCGGAGTTGGAGCGGTGGAGAAGCGACATCGAAGCTTCCCTTTCGGACTCGCAAGCGAGGGAGAGGTTGGCCTCCACCGATACCAGAAGGGATGCCATCATCAAGCTCCAGGCTTTTTTGGCCGAAGCCTGGGCTGATTTGGGCCCTCCCTTTCTTCAGTTAGCGGCGTCGATGCACGCGAACAAGGCCCAACAACACCACGAGGGAGAAAGTCAGAAGTCTACCGGTGCTGCTGCTGCTGAGAAAGTGCATTTAACAACAACCATTGAAGTCGAAAAGATTGGGGATTGCAGTTCTGTGGAGTTGCAAACGTTGGCTAAGGATTCTCTACTTAATTCATCTGAAGTGATTGAGGAGGCACCTATTAAAAAGCAGAGTCAAGAGGCAGAGGTACCTTGCTCACATGGTATTAGTAATAATGAGGCTGATCCAATGGAAAAGGACCAAACTTCTTTGCCTCATAATTGTTCCCGAAGGCCTAGTTTGATGGAAAAAAATAGTACCGCTCGTGTTTATGAGTGGGTTGATTCGATAGACGGCATGGAGGGTGGAACATCAAACTATTCAAGTAGATTTAATTTGCCTTCTCCGAAGAGGAGAAAACTTTCTCCTCTGAATATGTATAAGCCAACAGGCATTATAAAGAGGAGAAAATCAAAAAAGTGGAGTCAGTTAGAAGAGGAGACTCTTAAGACTGGTGTAGACAAGTTTGGCAGGGGAAATTGGAAGTTAATCCTAGATTCTTACAAAGATATATTTGAAGAGAGAACTGAAGTTGATTTGAAGGACAAGTGGAGAAATATGACGCGGTATGGGTGTAAATGA 1248 0.4784 MEKNDVGGSWVLEFLLRNPLPNNNLIKNLFRIIPVSDANSRLKKTLLLKTLQDHFSTLSIAEPLLKTLEILEELLRRDASPITATMSAAYCAVAVECTLKYLQLNLHHHNPAYLRAVKRIWRARVLHMNGSGSGEGSLLFSAELERWRSDIEASLSDSQARERLASTDTRRDAIIKLQAFLAEAWADLGPPFLQLAASMHANKAQQHHEGESQKSTGAAAAEKVHLTTTIEVEKIGDCSSVELQTLAKDSLLNSSEVIEEAPIKKQSQEAEVPCSHGISNNEADPMEKDQTSLPHNCSRRPSLMEKNSTARVYEWVDSIDGMEGGTSNYSSRFNLPSPKRRKLSPLNMYKPTGIIKRRKSKKWSQLEEETLKTGVDKFGRGNWKLILDSYKDIFEERTEVDLKDKWRNMTRYGCK 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00061 415 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 355 414 IPR017930 -
Spst9g00061 415 SUPERFAMILY Homeodomain-like 362 413 IPR009057 -
Spst9g00061 415 Gene3D - 363 415 - -
Spst9g00061 415 MobiDBLite consensus disorder prediction 279 301 - -
Spst9g00061 415 CDD SANT_TRF 361 411 - -
Spst9g00061 415 ProSiteProfiles Myb-like domain profile. 355 410 IPR001005 -
Spst9g00061 415 SMART sant 359 412 IPR001005 -
Spst9g00061 415 Pfam Myb-like DNA-binding domain 361 409 IPR001005 -
Spst9g00061 415 PANTHER MYB TRANSCRIPTION FACTOR 8 412 - -
Spst9g00061 415 MobiDBLite consensus disorder prediction 284 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g00061 Spst-Chr9 502929 504951 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g00061 5 409 Single Myb Histone (SMH) Gene Family AT1G15720 30.000 5.82e-32 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Spst9g00061 Myb_DNA-binding 2.5e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g00061 - K11111 ccaj:109817184 486.878