Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00058 ATGAGTGAGAGTGAGAAGCAGAGGGTAACCGGAAAGGTCAAGTGGTTCAATGATCAGAAGGGATTTGGCTTCATAACCACCGACGACGGCGGCGAGGATCTCTTCGTACACCAGTCCTCTATCCGATCCGACGGTTTTCGCAGCCTCGCCCTCGGGGAGTCCGTCGAGTTCCTAATCGACTCCGATTCCGAAGGCCGCACCAAGGCCGTCGACGTTACCGGCCCTGACGAATCGCCCGTGCTGGGCACCCGCGGTGGCGGAGGAGGCGGTGGGGGAAGAGGTGGCTACGGCGGACGAGGCGGATATGGCGGAGGTGGACGCGGCGGACGAGGTGGATATGGAGGAGGTGGCGGATATGGTGGAGGTGGCTATGGCGGAGGTGGTGGATATGGTGGTGGTGGTGGTGGTGGTGGAGGAGGGGGTTGCTATAAGTGTGGCGAGACAGGTCACATAGCAAGGGACTGCAGCCAAGGTGGCGGTGGCGGTGGAAGGTATGGCGGAGGTGGCGGCGGCGGTGGGAGCTGCTACAACTGTGGGGAGTCTGGGCACTTTGCAAGGGACTGCCCTTCGAATGCGCGCTGA 582 0.6237 MSESEKQRVTGKVKWFNDQKGFGFITTDDGGEDLFVHQSSIRSDGFRSLALGESVEFLIDSDSEGRTKAVDVTGPDESPVLGTRGGGGGGGGRGGYGGRGGYGGGGRGGRGGYGGGGGYGGGGYGGGGGYGGGGGGGGGGGCYKCGETGHIARDCSQGGGGGGRYGGGGGGGGSCYNCGESGHFARDCPSNAR 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00058 193 ProSiteProfiles Zinc finger CCHC-type profile. 175 190 IPR001878 GO:0003676|GO:0008270
Spst9g00058 193 PANTHER COLD SHOCK DOMAIN PROTEIN 2 109 191 - -
Spst9g00058 193 ProSiteProfiles Cold-shock (CSD) domain profile. 8 74 IPR002059 GO:0003676
Spst9g00058 193 PRINTS Cold shock protein signature 47 65 IPR002059 GO:0003676
Spst9g00058 193 PRINTS Cold shock protein signature 11 26 IPR002059 GO:0003676
Spst9g00058 193 PRINTS Cold shock protein signature 32 41 IPR002059 GO:0003676
Spst9g00058 193 Gene3D - 138 164 - -
Spst9g00058 193 Gene3D - 170 193 - -
Spst9g00058 193 ProSitePatterns Cold-shock (CSD) domain signature. 22 41 IPR019844 -
Spst9g00058 193 Gene3D - 1 85 IPR012340 -
Spst9g00058 193 MobiDBLite consensus disorder prediction 67 94 - -
Spst9g00058 193 FunFam Universal minicircle sequence binding protein (UMSBP), putative 168 193 - -
Spst9g00058 193 CDD CSP_CDS 9 74 IPR002059 GO:0003676
Spst9g00058 193 SUPERFAMILY Retrovirus zinc finger-like domains 132 191 IPR036875 GO:0003676|GO:0008270
Spst9g00058 193 SMART c2hcfinal6 174 190 IPR001878 GO:0003676|GO:0008270
Spst9g00058 193 SMART c2hcfinal6 141 157 IPR001878 GO:0003676|GO:0008270
Spst9g00058 193 ProSiteProfiles Zinc finger CCHC-type profile. 142 157 IPR001878 GO:0003676|GO:0008270
Spst9g00058 193 Pfam Zinc knuckle 141 157 IPR001878 GO:0003676|GO:0008270
Spst9g00058 193 Pfam Zinc knuckle 174 190 IPR001878 GO:0003676|GO:0008270
Spst9g00058 193 Pfam 'Cold-shock' DNA-binding domain 10 74 IPR002059 GO:0003676
Spst9g00058 193 SUPERFAMILY Nucleic acid-binding proteins 7 74 IPR012340 -
Spst9g00058 193 SMART csp_8 10 75 IPR011129 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g00058 Spst-Chr9 462989 463570 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Spst9g00058 CSD 1.9e-25 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g00058 - - gmx:100820359 217.238