Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00049 ATGGGAAGGTCCCCTTGCTGTGAGAAAGCACACACAAACAAAGGTGCATGGACCAAAGAAGAAGATGATCGCCTCATAGCTTACATTAGAGCTCACGGTGAAGGCTGCTGGCGCTCTCTCCCCAAAGCCGCCGGCCTTCTCCGCTGCGGCAAGAGCTGCCGTCTCCGCTGGATCAACTACCTCCGCCCTGACCTCAAACGCGGCAATTTCACCGAAGAAGAAGATGAACTCATCATCAAACTCCACAGCCTCCTTGGCAACAAGTGGTCTCTCATAGCTGGAAGATTGCCGGGGAGAACAGACAATGAGATTAAGAATTACTGGAACACCCACATAAGAAGGAAGCTTTTGAGCAGAGGAATCGACCCTGCAACTCACAGGCCTCTCAACGACTCCTCTCACCACAATCAACTTCAAGAATCACCTCCCGCCGCCACAATATCTTTTGCTCCCAAACAAGAGGAAAAGGACAACGTCTTTGTGGAGGTTAAGGATTCCAAGAGTCCGACATCGGAACGCTGCCCCGACTTGAACCTGGAGCTAACCATTAGTCCTCCCCATCACCAGGAGGAGGAGGAGGAGGAGGAGGAAGAAGAAGGTGACGATGAAGAGGATTTGAAGAGTATTGGGAGAAGCCTTTGCTTTGCCTGCAGTTTGGGTTTGCAAAACAGCAAAGATTGTAGCTGCGCCCTCGATGCCACAACCAGCCATGCCAACGCTGCTTCTGCCACCGGTTATGATTTCTTGGGCTTGAAAACAAACCCTTTGGACTACAGAAGCATGCAAATGAAATTAAATTAA 801 0.5044 MGRSPCCEKAHTNKGAWTKEEDDRLIAYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLLSRGIDPATHRPLNDSSHHNQLQESPPAATISFAPKQEEKDNVFVEVKDSKSPTSERCPDLNLELTISPPHHQEEEEEEEEEEGDDEEDLKSIGRSLCFACSLGLQNSKDCSCALDATTSHANAASATGYDFLGLKTNPLDYRSMQMKLN 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00049 266 FunFam MYB-related transcription factor 13 66 - -
Spst9g00049 266 CDD SANT 69 112 IPR001005 -
Spst9g00049 266 SMART sant 66 114 IPR001005 -
Spst9g00049 266 SMART sant 13 63 IPR001005 -
Spst9g00049 266 MobiDBLite consensus disorder prediction 190 204 - -
Spst9g00049 266 CDD SANT 16 61 IPR001005 -
Spst9g00049 266 Gene3D - 14 66 - -
Spst9g00049 266 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Spst9g00049 266 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Spst9g00049 266 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 199 - -
Spst9g00049 266 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Spst9g00049 266 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Spst9g00049 266 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Spst9g00049 266 FunFam MYB transcription factor MYB48 69 171 - -
Spst9g00049 266 SUPERFAMILY Homeodomain-like 13 108 IPR009057 -
Spst9g00049 266 MobiDBLite consensus disorder prediction 123 142 - -
Spst9g00049 266 MobiDBLite consensus disorder prediction 162 205 - -
Spst9g00049 266 Gene3D - 68 142 - -
Spst9g00049 266 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g00049 Spst-Chr9 410812 411686 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g00049 1 264 MYB Transcription Factor Family AT4G38620 57.095 1.46e-109 316
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Spst9g00049 Myb_DNA-binding 3.7e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g00049 K09422 - tcc:18607558 387.111