Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00042 ATGACAAGCCACGAAGACGACCTTGATCTCCTTCTCTCCCTTCAGGATAGAGTTCTCGAGACTCCTCCCGCTTCTCCCACACCGGATTACCTTTCCGATGACGAATTGTTCAACCAAAGGGACAAGCCTGACATGTCCGTATTCAAAACAGCCGTTCAGGATTGCCTTCCCTACGATCCCCCCAAAGCGCCCAAACCAACCAACAAACACCTAACTAATGATTCCCAGCTTGAAAAGTTTTCAGGCCTTCGCATTAGGAACCAATTGTTAACTCCTGCTGAGCTCAAGGAACACTTTTCAGACATTCGTTTTGTTCGGTTATCTGTTATAAAGAATTCGTTAATTGGGGATACTTTTTCTGGGAGTTGGGCCACTGTTGGTGTGTTGACTGAGAAGGGGAGTCAGAAGGTGAGTTCAACAGGGAAAAGCTATTCTATATGGAAAATTGGGTGCCTGGATGAATGTACGGTTTCTCTTTTCTTGTTTGGAGATGCTTATCAGAGGAACATGCAAGAGCAAGCGGGAACGGTCTTTGCACTGTTTAACTGTACTGTTCGCAAGGACAATGCGGGTAATGGTTTTTCCTTGAGCATATACTCCACTAGACAAATTATGAAGATGGGCACCTCTGTTGATTATGGAGTTTGCAAAGGGAAACGATCAGATGGGATGGCTTGTACGCTGGTCATAAATAAACGTCATGGGACATATTGTAAATATCATAAATCGAAAGCATCAGAGAAGTATTCCACGATGCGAAGTGAACTCAAAGGAGGAAACTTAAGAACAGCGTTTAGGCCTAAGGATTACCTCAAATCCGAAGGAATTTACTTAGTTGACCCTCTTGCTGACAAATCAAACTTAAAAAAGTCTCAGCCAGTGAAACTATTGTCCGTGGATGGTCTCAGAAAGGCATTGAGCAATGCTGGAAAAGTGACAACATCAACTCATTCTCAAGGGATTAGGTTTCTTTCTCAGCTTGCAGCCAAGTCAGATCCAAAACTGAAGAATAAAGGACCAAAGATTCCAAATGAACAAAACAAAAGCACGGAGAAGAGGAAATCATCTTTTCCCAGTGTGGGATCATCTTCAGTCATGAGAAACCGACAGTTGGATGGAAAAAGAATAAAACCAGACGCGCAGGTTTTGGCTGCTAAAACCCCAAAGAGTACAGAAAAGATGATTGAATTAGATTTTGTTAGCTCGGATGAAGACTTATGA 1221 0.4283 MTSHEDDLDLLLSLQDRVLETPPASPTPDYLSDDELFNQRDKPDMSVFKTAVQDCLPYDPPKAPKPTNKHLTNDSQLEKFSGLRIRNQLLTPAELKEHFSDIRFVRLSVIKNSLIGDTFSGSWATVGVLTEKGSQKVSSTGKSYSIWKIGCLDECTVSLFLFGDAYQRNMQEQAGTVFALFNCTVRKDNAGNGFSLSIYSTRQIMKMGTSVDYGVCKGKRSDGMACTLVINKRHGTYCKYHKSKASEKYSTMRSELKGGNLRTAFRPKDYLKSEGIYLVDPLADKSNLKKSQPVKLLSVDGLRKALSNAGKVTTSTHSQGIRFLSQLAAKSDPKLKNKGPKIPNEQNKSTEKRKSSFPSVGSSSVMRNRQLDGKRIKPDAQVLAAKTPKSTEKMIELDFVSSDEDL 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00042 406 PANTHER PROTEIN MCM10 HOMOLOG 23 394 IPR040184 GO:0003690|GO:0003697|GO:0006270
Spst9g00042 406 Pfam Primase zinc finger 208 253 IPR015408 GO:0005634|GO:0006260
Spst9g00042 406 MobiDBLite consensus disorder prediction 334 352 - -
Spst9g00042 406 MobiDBLite consensus disorder prediction 353 369 - -
Spst9g00042 406 FunFam DNA replication licensing factor mcm10 69 243 - -
Spst9g00042 406 Gene3D - 68 242 IPR012340 -
Spst9g00042 406 MobiDBLite consensus disorder prediction 330 388 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g00042 17 405 Core DNA Replication Machinery Family AT2G20980 56.533 1.48e-146 420
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g00042 K10736 - gmx:100527758 652.514
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g00042 9 340783 343566 Spst9g00042 9 340783 343566 ECH