Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00030 ATGTTTGTATTTCTTAGCCGCCGAACCTACGGATTTCTTTTTGATTGGTTGTACCCTGCACACATGCCTCTACTCTTAAAAGGCGTCTCACATTGGACAGACACCCCAGAGGTTACCACCCCATTGTTAAAGTTCATGGCTGAGTTTGTGCTAAATAAAGCTCAACGTTTAACATTTGACTCTTCTTCTCCCAATGGCATACTTCTTTTCCGGGAAGTTAGTATACTGATTGTAGCGTATGGATCTAGGGTTCTGACTCTTCCAAATGCTGCTGATATTTATACATACAAGTACAAAGGAATATGGATTTGTTTAACTATACTGTCAAGAGGTGAAATCCCAGCCCTGTTTATTTCTGGAGCATGGTCTTGTGTTCTGCTTGAAGAGTTGATTGTATGTGGACGGGCTAAATTTAATATCTGGCATCAAATGACAGCCCTTTCCGGAAATTATGTCAACTTTGGTGTGTTCGAACTATACGGTGACAGAGCTCTATCTGACGCTCTTGATGCTGCTCTAAAGATGACACTGTCAATTCCTATGTCTGATATATTGGCTTATAGGAAGGTTGCCAAATACTATTACGATGGATCTCACTTAGTTATTGCTTTTATGCAGCTAACGAGGGCTTATTTTGCATTCTTGGAGGTTCTGTTCAATAGCCACATCACTTTTGTATTAAACTTGGACGCAAACACCTTCATGCATATGGTTGGCTCCCTTGAATCTGGGCTTAAAGGATTAGATACGAGTATCTCATCACAGGTTATGGCTACAAGATCTCATTCCCATGCTCTTGTTTTCAGACTGAAGGACATTTTTCCATTGAATATTTTACGATATTCTGTTGATTGTGCGTCTGCTGTTGATAATTTGGCTGCCTTCTATTTTAACAACATCACCATGGGAGAGGCTCCAAATTTACCTGCATCTGTCAATCTTGCTCGTCATATTGCAGAATGTCCCAATCTGTTTCCTGAAATTTTGAAGACCCTATTTGAGATCATACTGTTTGAAGACTGTGGGAACCAATGGAGTCTGAGTAGGCCAATGTTGAGCTTGATACTCATTAATGAGCAGATATTCTCTGATCTGAAAGCTCAAATATTGGCATCACAGCCAATGGATCAGCATCAGCGGCTCTCTTCATGCTTCGATAAACTCATGGCAGATGTTACTCTAAGCATAGATTCAAAGAACAGGGATAAGTTTACTCAAAATCTCACCAACTGCAACGACATGGGCGATGGAACAGAAACCGCGAAAGAAAACATCGCTATTGCTAGGCCGCAGTGCACTTTTATCTCTCAAGAGGACGATGTGTGGCTGAGTTTCCTTCAACTGGAACATCCTCATACTCATTTTCTTGTGGAGGATCAAATTTTGCAATACTCTTCTGTCACAACAGAAATGGAACACAAATACGGTAGCGCATCACACCGAGCAGCTTCATTGAATAGGTTTCGGCAAAAGAGGAAACAACTATGTTTTGCTAATAAAATAAGATATAGAACACGTCAAGAAGCTACTCTCAGAGTACATCGTAGCAAGAGCCAGATTATTTTGTCCAAAATCCACGAGTCAGGGCAAGAGGACATTCACTCAGTGAATTGTGGCATTAGTTCAAAATACACCCCTATGATGCGGCGAGGACCATCTGGTCCAGGATCACTTTGCAATGCATGTGGGCTATCTTGGGCAAACAGGGGTGTGTTCAACTATAAGAAAGCAATTTAG 1737 0.4122 MFVFLSRRTYGFLFDWLYPAHMPLLLKGVSHWTDTPEVTTPLLKFMAEFVLNKAQRLTFDSSSPNGILLFREVSILIVAYGSRVLTLPNAADIYTYKYKGIWICLTILSRGEIPALFISGAWSCVLLEELIVCGRAKFNIWHQMTALSGNYVNFGVFELYGDRALSDALDAALKMTLSIPMSDILAYRKVAKYYYDGSHLVIAFMQLTRAYFAFLEVLFNSHITFVLNLDANTFMHMVGSLESGLKGLDTSISSQVMATRSHSHALVFRLKDIFPLNILRYSVDCASAVDNLAAFYFNNITMGEAPNLPASVNLARHIAECPNLFPEILKTLFEIILFEDCGNQWSLSRPMLSLILINEQIFSDLKAQILASQPMDQHQRLSSCFDKLMADVTLSIDSKNRDKFTQNLTNCNDMGDGTETAKENIAIARPQCTFISQEDDVWLSFLQLEHPHTHFLVEDQILQYSSVTTEMEHKYGSASHRAASLNRFRQKRKQLCFANKIRYRTRQEATLRVHRSKSQIILSKIHESGQEDIHSVNCGISSKYTPMMRRGPSGPGSLCNACGLSWANRGVFNYKKAI 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00030 578 Gene3D - 534 577 IPR013088 GO:0006355|GO:0008270
Spst9g00030 578 Pfam GATA zinc finger 537 571 IPR000679 GO:0006355|GO:0043565
Spst9g00030 578 ProSiteProfiles CCT domain profile. 481 523 IPR010402 GO:0005515
Spst9g00030 578 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 536 572 - -
Spst9g00030 578 CDD ZnF_GATA 536 571 IPR000679 GO:0006355|GO:0043565
Spst9g00030 578 PANTHER EXPORTIN 4,7-RELATED 146 410 IPR044189 GO:0005049|GO:0051169
Spst9g00030 578 FunFam ARM repeat superfamily protein 274 414 - -
Spst9g00030 578 SMART GATA_3 529 576 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g00030 Spst-Chr9 276665 285118 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g00030 480 572 Tify Gene Family AT4G24470 53.271 4.17e-29 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Spst9g00030 GATA 2.3e-11 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g00030 K18460 - gmx:100804346 578.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g00030 9 276665 285118 Spst9g00030 9 276665 285118 ECH